Connectome Resources
The following are other resources which have been developed by the community for sharing information related to C. elegans connectomics.
WormAtlas
A comprehensive resource containing a huge amount of information on C. elegans anatomy and behaviour, including a number of introductory handbooks.
A primary source of information ofr this resource on individual neurons.
Worm Wiring
WormWiring is...
WormBase
WormBase is...
WormNeuroAtlas
WormNeuroAtlas is a python package... Randi et al. 2023...
WormBook
Introductory chapters on a number of aspects of worm biology, including neurobiology and behavior.
WormWeb
WormWeb is a collection of tools for scientists, especially C. elegans researchers, by Nikhil Bhatla.
NemaNode
NemaNode is an open source software package developed by the Zhen Lab and is used to visualise the datasets presented in Witvliet et al. 2021.
parsetrakem2
Parsetrakem2 is software to quantify the pairwise membrane contacts between TrakEM2 segmented processes, as used in Brittin et al. 2021.
Elegance
Elegance is a program designed and used by the Emmons laboratory for rapid annotation of electron micrographs for connectomics (used in Jarrell et al. 2012, Cook et al. 2019 & Cook et al. 2020).
EleganSign
EleganSign is a novel database that predicts the polarities of ionotropic chemical synapses in the neuronal connectome network of the nematode Caenorhabditis elegans. Presented in Fenyves et al. 2020.
WormWideWeb
WormWideWeb contains many whole-brain calcium imaging datasets from freely moving worms. See Atanas et al. 2023.
NemaMod
NemaMod is an application for intuitive and rapid visualisation of neuropeptide connections in C. elegans. The data shown in the app was generated for the paper Ripoll-Sanchez et al. 2023.
FunCoNN (Beta)
FunCoNN is an interactive browser of functional connectivity measurements of C.elegans that is overlaid on top of connectomics data present within NemaNode. The functional data shown in the app was generated for the paper Randi et al. 2023.