Dataset: Olivares et al. 2021 (model)
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WhiteJSH WhiteN2U White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Dataset taken from OlivaresModel. Data extracted from a NeuroML file based on Olivares et al. 2021. Python Reader: OlivaresModelReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Subset of cells involved in locomotion
Locomotion 2 (Loco2)
Subset of cells involved in locomotion
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (9, 9) matrix | 24 non-zero entries 7 nodes with self-connections Avg. weight: 41.976030 Sum of weights: 1007.42473187 |
AS, DA, DB, DD, VA, VB, VD | AS, DA, DB, DD, MD, MV, VA, VB, VD |
| Electrical | (9, 9) matrix | 8 non-zero entries Matrix is symmetric with 4 unique pairs (total unique pair weight: 12.2847606) Avg. weight: 3.071190 Sum of weights: 24.5695212 |
AS, DA, DB, DD, VA, VB, VD | AS, DA, DB, DD, VA, VB, VD |
| ExcitatoryChem | (9, 9) matrix | 14 non-zero entries 4 nodes with self-connections Avg. weight: 23.731815 Sum of weights: 332.24541229 |
AS, DA, DB, DD, VA, VB | AS, DB, DD, MD, MV, VA, VD |
| InhibitoryChem | (9, 9) matrix | 11 non-zero entries 3 nodes with self-connections Avg. weight: 61.379938 Sum of weights: 675.1793195800001 |
AS, DA, DB, DD, VA, VB, VD | AS, DA, DB, DD, MD, MV, VA, VB, VD |
Weight definition: TODO
Validation tests: See here