Dataset: UpdSSData
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White_A White_L4 White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Data extracted from herm_full_edgelist.csv for neuronal connectivity. Note: legacy dataset (based on Cook et al. 2019) used in the past in OpenWorm. Only included here for reference! Do not use!. Python Reader: UpdatedSpreadsheetDataReader
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Raw Data Neurons Pharynx Social Network Escape Response Circuit Cook 2019 Fig 3 BrainMap A BrainMap B Locomotion 1 Locomotion 2 Locomotion 3 Peptidergic Hubs Nonpharyngeal Neurons (herm) Sensory Neurons (somatic) Motor Neurons (somatic) Interneurons (somatic)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
Symmetry graph of that view, Full1, is not possible, as it contains nodes with multiple cells
Symmetry graph of that view, Full1, is not possible, as it contains nodes with multiple cells
Symmetry graph of that view, Full1, is not possible, as it contains nodes with multiple cells
Symmetry graph of that view, Full1, is not possible, as it contains nodes with multiple cells
Cook 2019 Fig 3 (Full1)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (17, 17) matrix | 185 non-zero entries, avg. weight: 134.6972972972973, sum: 24919.0 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Electrical | (17, 17) matrix | 142 non-zero entries, avg. weight: 79.83802816901408, sum: 11337.0 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Acetylcholine | (17, 17) matrix | 185 non-zero entries, avg. weight: 130.8054054054054, sum: 24199.0 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| GABA | (17, 17) matrix | 6 non-zero entries, avg. weight: 120.0, sum: 720.0 | MNVC | IN1, IN2, IN3, MNVC, MUBODY, MUHEAD |