Dataset: Cook et al. 2020

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White_A White_L4 White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel

Dataset taken from Cook et al. 2020. Data extracted from cne24932-sup-0004-supinfo4.csv and cne24932-sup-0005-supinfo5.csv for connectivity of pharyngeal neurons, muscles and other cells. Python Reader: Cook2020DataReader

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Raw Data Neurons Pharynx Social Network Escape Response Circuit Cook 2019 Fig 3 BrainMap A BrainMap B Locomotion 1 Locomotion 2 Locomotion 3 Peptidergic Hubs Nonpharyngeal Neurons (herm) Sensory Neurons (somatic) Motor Neurons (somatic) Interneurons (somatic)

A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019

No connections present in this view

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Cook 2019 Fig 3 (Full1)

A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019

Connection type	Total size	Values present	Nodes with pre connections	Nodes with post connections

Nodes in current view (17 total) xxxxxxxxxxxxxxxxxxxxxxxxx	Num cells in node (373 total)	Cells in node
SN1 Cephalic sensory neurons	26	CEPDL, CEPDR, CEPVL, CEPVR, IL1DL, IL1DR, IL1L, IL1R, IL1VL, IL1VR, IL2DL, IL2DR, IL2L, IL2R, IL2VL, IL2VR, OLLL, OLLR, OLQDL, OLQDR, OLQVL, OLQVR, URYDL, URYDR, URYVL, URYVR
SN2 Phasmid sensory neurons	6	PHAL, PHAR, PHBL, PHBR, PHCL, PHCR
SN3 Mechanosensory neurons	15	ADEL, ADER, ALML, ALMR, AVM, DVA, FLPL, FLPR, PDEL, PDER, PLML, PLMR, PVDL, PVDR, PVM
SN4 Touch, O2, CO2, social signal sensing neurons	12	ALNL, ALNR, AQR, BAGL, BAGR, PLNL, PLNR, PQR, SDQL, SDQR, URXL, URXR
SN5 Amphid, nociceptive neurons	4	ADLL, ADLR, ASHL, ASHR
SN6 Amphid neurons	20	ADFL, ADFR, AFDL, AFDR, ASEL, ASER, ASGL, ASGR, ASIL, ASIR, ASJL, ASJR, ASKL, ASKR, AWAL, AWAR, AWBL, AWBR, AWCL, AWCR
IN1 Layer 1 interneurons	13	AVAL, AVAR, AVBL, AVBR, AVEL, AVER, PVCL, PVCR, RIAL, RIAR, RID, RIML, RIMR
IN2 Layer 2 interneurons	27	AIBL, AIBR, AVDL, AVDR, AVJL, AVJR, AVKL, AVKR, AVL, DVC, PVT, PVWL, PVWR, RIBL, RIBR, RICL, RICR, RIGL, RIGR, RMFL, RMFR, RMGL, RMGR, SAADL, SAADR, SAAVL, SAAVR
IN3 Layer 3 interneurons	31	ADAL, ADAR, AIAL, AIAR, AIYL, AIYR, AIZL, AIZR, ALA, AUAL, AUAR, AVFL, AVFR, AVG, AVHL, AVHR, BDUL, BDUR, DVB, LUAL, LUAR, PVNL, PVNR, PVPL, PVPR, PVQL, PVQR, PVR, RIFL, RIFR, RIS
IN4 Category 4 interneurons	8	AIML, AIMR, AINL, AINR, RIH, RIR, URBL, URBR
HMN Head motorneurons	18	RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, RMHR, URADL, URADR, URAVL, URAVR
SMN Sublateral motorneurons	19	SABD, SABVL, SABVR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR
MNVC Ventral cord motorneurons	71	AS1, AS10, AS11, AS2, AS3, AS4, AS5, AS6, AS7, AS8, AS9, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, DD1, DD2, DD3, DD4, DD5, DD6, PDA, PDB, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9
VC Ventral C-type motorneurons	6	VC1, VC2, VC3, VC4, VC5, VC6
HSN Hermaphrodite specific motorneurons	2	HSNL, HSNR
MUBODY Body wall muscles	67	MDL08, MDL09, MDL10, MDL11, MDL12, MDL13, MDL14, MDL15, MDL16, MDL17, MDL18, MDL19, MDL20, MDL21, MDL22, MDL23, MDL24, MDR08, MDR09, MDR10, MDR11, MDR12, MDR13, MDR14, MDR15, MDR16, MDR17, MDR18, MDR19, MDR20, MDR21, MDR22, MDR23, MDR24, MVL08, MVL09, MVL10, MVL11, MVL12, MVL13, MVL14, MVL15, MVL16, MVL17, MVL18, MVL19, MVL20, MVL21, MVL22, MVL23, MVR08, MVR09, MVR10, MVR11, MVR12, MVR13, MVR14, MVR15, MVR16, MVR17, MVR18, MVR19, MVR20, MVR21, MVR22, MVR23, MVR24
MUHEAD Head muscles	28	MDL01, MDL02, MDL03, MDL04, MDL05, MDL06, MDL07, MDR01, MDR02, MDR03, MDR04, MDR05, MDR06, MDR07, MVL01, MVL02, MVL03, MVL04, MVL05, MVL06, MVL07, MVR01, MVR02, MVR03, MVR04, MVR05, MVR06, MVR07

Neurons (herm) (22)

Full list of Neurons (hermaphrodite only) in this dataset

I1L | I1R | I2L | I2R | I3 | I4 | I5 | I6 | M1 | M2L | M2R | M3L | M3R | M4 | M5 | MCL | MCR | MI | NSML | NSMR | RIPL | RIPR

Missing neurons (280)

Full list of Missing neurons (known hermaphrodite neurons not present)

Muscles (20)

Full list of Muscles in this dataset

Other cells (21)

Full list of Other cells in this dataset

bm | e2DL | e2DR | e2V | e3D | e3VL | e3VR | g1AL | g1AR | g1P | g2L | g2R | mc1DL | mc1DR | mc1V | mc2DL | mc2DR | mc2V | mc3DL | mc3DR | mc3V