All C. elegans cells
Hermaphrodite
Muscle
Intestinal muscle
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| mu_intL | Intestinal muscles | Cook2019Herm, Cook2019Male | WormAtlas |
| mu_intR | Intestinal muscles | Cook2019Herm, Cook2019Male | WormAtlas |
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| MVULVA | Vulval muscle | SSData | WormAtlas |
| vm1AL | Vulval muscle | Cook2019Herm | WormAtlas |
| vm1AR | Vulval muscle | Cook2019Herm | WormAtlas |
| vm1PL | Vulval muscle | Cook2019Herm | WormAtlas |
| vm1PR | Vulval muscle | Cook2019Herm | WormAtlas |
| vm2AL | Vulval muscle | Cook2019Herm | WormAtlas |
| vm2AR | Vulval muscle | Cook2019Herm | WormAtlas |
| vm2PL | Vulval muscle | Cook2019Herm | WormAtlas |
| vm2PR | Vulval muscle | Cook2019Herm | WormAtlas |
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No connections of this type found.
No connections of this type found.
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| um1AL | Uterine muscle | Cook2019Herm | WormAtlas |
| um1AR | Uterine muscle | Cook2019Herm | WormAtlas |
| um1PL | Uterine muscle | Cook2019Herm | WormAtlas |
| um1PR | Uterine muscle | Cook2019Herm | WormAtlas |
| um2AL | Uterine muscle | Cook2019Herm | WormAtlas |
| um2AR | Uterine muscle | Cook2019Herm | WormAtlas |
| um2PL | Uterine muscle | Cook2019Herm | WormAtlas |
| um2PR | Uterine muscle | Cook2019Herm | WormAtlas |
Sphincter and anal depressor muscle
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| MANAL | Anal/sphincter muscle | SSData | WormAtlas |
| mu_anal | Anal/sphincter muscle | Cook2019Herm, Cook2019Male | WormAtlas |
| mu_sph | Anal/sphincter muscle | Cook2019Herm, Cook2019Male | WormAtlas |
Odd numbered pharyngeal muscle
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| pm1 | Pharyngeal muscle | White_whole, Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm3D | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm3VL | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm3VR | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm5D | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm5VL | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm5VR | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm7D | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm7VL | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm7VR | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| pm2D | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm2VL | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm2VR | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm4D | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm4VL | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm4VR | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm4_UNSPECIFIED | Pharyngeal muscle | White_whole | WormAtlas |
| pm6D | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm6VL | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm6VR | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| pm8 | Pharyngeal muscle | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
Alimentary System
Marginal cells (mc) of the pharynx
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| mc1DL | Marginal cell of the pharynx | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| mc1DR | Marginal cell of the pharynx | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| mc1V | Marginal cell of the pharynx | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| mc2DL | Marginal cell of the pharynx | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| mc2DR | Marginal cell of the pharynx | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| mc2V | Marginal cell of the pharynx | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| mc3DL | Marginal cell of the pharynx | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| mc3DR | Marginal cell of the pharynx | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| mc3V | Marginal cell of the pharynx | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
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No connections of this type found.
No connections of this type found.
| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| int | Intestine | Cook2019Herm | WormAtlas |
Reproductive System
Nervous Tissue
Interneuron
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No connections of this type found.
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| CANL | Canal neuron | Cook2019Herm, Cook2019Male, RipollSanchezShortRange, RipollSanchezMidRange, RipollSanchezLongRange | WormAtlas OSB 3D |
| CANR | Canal neuron | Cook2019Herm, Cook2019Male, Witvliet6, Witvliet7, RipollSanchezShortRange, RipollSanchezMidRange, RipollSanchezLongRange | WormAtlas OSB 3D |
Excretory System
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| exc_gl | Excretory gland | Cook2019Herm, Cook2019Male, Witvliet2 | exc_gl |
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| exc_cell | Excretory cell | Cook2019Herm, Cook2019Male | exc_cell |
Epithelial Tissue
Hypodermis
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| hyp | Hypodermis | Cook2019Herm, Cook2019Male | WormAtlas |
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| CEPshDL | Sheath cell other than amphid sheath and phasmid | Cook2019Herm, Cook2019Male, Witvliet1, Witvliet2, Witvliet3, Witvliet4, Witvliet5, Witvliet6, Witvliet7, Witvliet8 | WormAtlas |
| CEPshDR | Sheath cell other than amphid sheath and phasmid | White_A, Cook2019Herm, Cook2019Male, Witvliet1, Witvliet2, Witvliet3, Witvliet4, Witvliet5, Witvliet6, Witvliet7, Witvliet8 | WormAtlas |
| CEPshVL | Sheath cell other than amphid sheath and phasmid | White_A, White_L4, Cook2019Herm, Cook2019Male, Witvliet1, Witvliet2, Witvliet3, Witvliet4, Witvliet5, Witvliet6, Witvliet7, Witvliet8 | WormAtlas |
| CEPshVR | Sheath cell other than amphid sheath and phasmid | White_A, White_L4, Cook2019Herm, Cook2019Male, Witvliet1, Witvliet2, Witvliet3, Witvliet4, Witvliet5, Witvliet6, Witvliet7, Witvliet8 | WormAtlas |
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| e2D | Pharyngeal epithelium | Cook2019Herm, Cook2019Male | WormAtlas |
| e2DL | Pharyngeal epithelium | Cook2020 | WormAtlas |
| e2DR | Pharyngeal epithelium | Cook2020 | WormAtlas |
| e2V | Pharyngeal epithelium | Cook2020 | WormAtlas |
| e2VL | Pharyngeal epithelium | Cook2019Herm, Cook2019Male | WormAtlas |
| e2VR | Pharyngeal epithelium | Cook2019Herm, Cook2019Male | WormAtlas |
| e3D | Pharyngeal epithelium | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| e3VL | Pharyngeal epithelium | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| e3VR | Pharyngeal epithelium | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| g1AL | Pharyngeal glial cell | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| g1AR | Pharyngeal glial cell | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| g1P | Pharyngeal glial cell | Cook2020 | WormAtlas |
| g1p | Pharyngeal glial cell | Cook2019Herm, Cook2019Male | WormAtlas |
| g2L | Pharyngeal glial cell | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
| g2R | Pharyngeal glial cell | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
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No connections of this type found.
No connections of this type found.
| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| bm | Pharyngeal basement membrane | Cook2019Herm, Cook2019Male, Cook2020 | WormAtlas |
GLR cell
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No connections of this type found.
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| GLRDL | GLR cell | White_A, White_whole, Cook2019Herm, Witvliet1, Witvliet2, Witvliet3, Witvliet4, Witvliet5, Witvliet7 | WormAtlas |
| GLRDR | GLR cell | White_A, White_whole, Cook2019Herm, Cook2019Male, Witvliet1, Witvliet2, Witvliet3, Witvliet4, Witvliet5, Witvliet6, Witvliet7, Witvliet8 | WormAtlas |
| GLRL | GLR cell | White_A, White_whole, Cook2019Herm, Witvliet1, Witvliet2, Witvliet3, Witvliet4, Witvliet5, Witvliet6, Witvliet7 | WormAtlas |
| GLRR | GLR cell | White_A, White_L4, White_whole, Cook2019Herm, Witvliet2, Witvliet4, Witvliet6, Witvliet7, Witvliet8 | WormAtlas |
| GLRVL | GLR cell | White_A, White_L4, White_whole, Cook2019Herm, Cook2019Male, Witvliet1, Witvliet2, Witvliet3, Witvliet4, Witvliet5, Witvliet6, Witvliet8 | WormAtlas |
| GLRVR | GLR cell | White_A, White_L4, White_whole, Cook2019Herm, Cook2019Male, Witvliet1, Witvliet2, Witvliet3, Witvliet4, Witvliet5, Witvliet6, Witvliet7 | WormAtlas |
Head mesodermal cell
No connections of this type found.
No connections of this type found.
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| hmc | Head mesodermal cell | Cook2019Herm, Cook2019Male | WormAtlas |
Male
Muscle
Diagonal muscles
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| dglL1 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglL2 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglL3 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglL4 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglL5 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglL6 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglL7 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglR1 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglR2 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglR3 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglR4 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglR5 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglR6 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglR7 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
| dglR8 | Diagonal muscle (male specific) | Cook2019Male | WormAtlas |
Posterior outer longitudinal muscles
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| polL | Posterior outer longitudinal muscle (male specific) | Cook2019Male | WormAtlas |
| polR | Posterior outer longitudinal muscle (male specific) | Cook2019Male | WormAtlas |
Anterior inner longitudinal muscles
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| ailL | Anterior inner longitudinal muscle (male specific) | Cook2019Male | WormAtlas |
| ailR | Anterior inner longitudinal muscle (male specific) | Cook2019Male | WormAtlas |
Posterior inner longitudinal muscles
No connections of this type found.
No connections of this type found.
No connections of this type found.
| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| pilL | Posterior inner longitudinal muscle (male specific) | WormAtlas |
|
| pilR | Posterior inner longitudinal muscle (male specific) | WormAtlas |
Caudal inner longitudinal muscles
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| cdlL | Caudal longitudinal muscle (male specific) | Cook2019Male | WormAtlas |
| cdlR | Caudal longitudinal muscle (male specific) | Cook2019Male | WormAtlas |
Spicule retractor muscles
No connections of this type found.
No connections of this type found.
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| dsrL | Dorsal spicule retractor (male specific) | Cook2019Male | WormAtlas |
| dsrR | Dorsal spicule retractor (male specific) | Cook2019Male | WormAtlas |
| vsrL | Ventral spicule retractor (male specific) | Cook2019Male | WormAtlas |
| vsrR | Ventral spicule retractor (male specific) | Cook2019Male | WormAtlas |
Spicule protractor muscles
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| dspL | Dorsal spicule protractor (male specific) | Cook2019Male | WormAtlas |
| dspR | Dorsal spicule protractor (male specific) | Cook2019Male | WormAtlas |
| vspL | Ventral spicule protractor (male specific) | Cook2019Male | WormAtlas |
| vspR | Ventral spicule protractor (male specific) | Cook2019Male | WormAtlas |
Gubernacular retractor muscles
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| grtL | Gubernacular retractor (male specific) | Cook2019Male | WormAtlas |
| grtR | Gubernacular retractor (male specific) | Cook2019Male | WormAtlas |
Gubernacular erector muscles
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| gecL | Gubernacular erector (male specific) | Cook2019Male | WormAtlas |
| gecR | Gubernacular erector (male specific) | Cook2019Male | WormAtlas |
Anterior oblique muscles
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No connections of this type found.
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| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| aobL | Anterior oblique (male specific) | Cook2019Male | WormAtlas |
| aobR | Anterior oblique (male specific) | Cook2019Male | WormAtlas |
Posterior oblique muscles
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No connections of this type found.
No connections of this type found.
| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| pobL | Posterior oblique (male specific) | Cook2019Male | WormAtlas |
| pobR | Posterior oblique (male specific) | Cook2019Male | WormAtlas |
Reproductive System
Vas deferens
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No connections of this type found.
No connections of this type found.
| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| gonad | Gonad (male specific) | Cook2019Male | gonad |
Proctodeum
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No connections of this type found.
No connections of this type found.
| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| proctodeum | Proctodeum (male specific) | Cook2019Male | proctodeum |
Epithelial Tissue
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0.8888888888888888,
"#fdca26"
],
[
1.0,
"#f0f921"
]
],
"sequentialminus": [
[
0.0,
"#0d0887"
],
[
0.1111111111111111,
"#46039f"
],
[
0.2222222222222222,
"#7201a8"
],
[
0.3333333333333333,
"#9c179e"
],
[
0.4444444444444444,
"#bd3786"
],
[
0.5555555555555556,
"#d8576b"
],
[
0.6666666666666666,
"#ed7953"
],
[
0.7777777777777778,
"#fb9f3a"
],
[
0.8888888888888888,
"#fdca26"
],
[
1.0,
"#f0f921"
]
]
},
"colorway": [
"#636efa",
"#EF553B",
"#00cc96",
"#ab63fa",
"#FFA15A",
"#19d3f3",
"#FF6692",
"#B6E880",
"#FF97FF",
"#FECB52"
],
"font": {
"color": "#2a3f5f"
},
"geo": {
"bgcolor": "white",
"lakecolor": "white",
"landcolor": "#E5ECF6",
"showlakes": true,
"showland": true,
"subunitcolor": "white"
},
"hoverlabel": {
"align": "left"
},
"hovermode": "closest",
"mapbox": {
"style": "light"
},
"paper_bgcolor": "white",
"plot_bgcolor": "#E5ECF6",
"polar": {
"angularaxis": {
"gridcolor": "white",
"linecolor": "white",
"ticks": ""
},
"bgcolor": "#E5ECF6",
"radialaxis": {
"gridcolor": "white",
"linecolor": "white",
"ticks": ""
}
},
"scene": {
"xaxis": {
"backgroundcolor": "#E5ECF6",
"gridcolor": "white",
"gridwidth": 2,
"linecolor": "white",
"showbackground": true,
"ticks": "",
"zerolinecolor": "white"
},
"yaxis": {
"backgroundcolor": "#E5ECF6",
"gridcolor": "white",
"gridwidth": 2,
"linecolor": "white",
"showbackground": true,
"ticks": "",
"zerolinecolor": "white"
},
"zaxis": {
"backgroundcolor": "#E5ECF6",
"gridcolor": "white",
"gridwidth": 2,
"linecolor": "white",
"showbackground": true,
"ticks": "",
"zerolinecolor": "white"
}
},
"shapedefaults": {
"line": {
"color": "#2a3f5f"
}
},
"ternary": {
"aaxis": {
"gridcolor": "white",
"linecolor": "white",
"ticks": ""
},
"baxis": {
"gridcolor": "white",
"linecolor": "white",
"ticks": ""
},
"bgcolor": "#E5ECF6",
"caxis": {
"gridcolor": "white",
"linecolor": "white",
"ticks": ""
}
},
"title": {
"x": 0.05
},
"xaxis": {
"automargin": true,
"gridcolor": "white",
"linecolor": "white",
"ticks": "",
"title": {
"standoff": 15
},
"zerolinecolor": "white",
"zerolinewidth": 2
},
"yaxis": {
"automargin": true,
"gridcolor": "white",
"linecolor": "white",
"ticks": "",
"title": {
"standoff": 15
},
"zerolinecolor": "white",
"zerolinewidth": 2
}
}
}
}
}
| 0 | 1 | 2 | |
|---|---|---|---|
| Notes | Datasets | Link | |
| R1shL | Male ray structural cell | Cook2019Male | WormAtlas |
| R1shR | Male ray structural cell | Cook2019Male | WormAtlas |
| R1stL | Male ray structural cell | WormAtlas |
|
| R1stR | Male ray structural cell | WormAtlas |
|
| R2shL | Male ray structural cell | Cook2019Male | WormAtlas |
| R2shR | Male ray structural cell | Cook2019Male | WormAtlas |
| R2stL | Male ray structural cell | WormAtlas |
|
| R2stR | Male ray structural cell | WormAtlas |
|
| R3shL | Male ray structural cell | Cook2019Male | WormAtlas |
| R3shR | Male ray structural cell | Cook2019Male | WormAtlas |
| R3stL | Male ray structural cell | WormAtlas |
|
| R3stR | Male ray structural cell | WormAtlas |
|
| R4shL | Male ray structural cell | Cook2019Male | WormAtlas |
| R4shR | Male ray structural cell | WormAtlas |
|
| R4stL | Male ray structural cell | WormAtlas |
|
| R4stR | Male ray structural cell | WormAtlas |
|
| R5shL | Male ray structural cell | Cook2019Male | WormAtlas |
| R5shR | Male ray structural cell | Cook2019Male | WormAtlas |
| R5stL | Male ray structural cell | WormAtlas |
|
| R5stR | Male ray structural cell | WormAtlas |
|
| R6shL | Male ray structural cell | WormAtlas |
|
| R6shR | Male ray structural cell | WormAtlas |
|
| R6stL | Male ray structural cell | WormAtlas |
|
| R6stR | Male ray structural cell | WormAtlas |
|
| R7shL | Male ray structural cell | Cook2019Male | WormAtlas |
| R7shR | Male ray structural cell | Cook2019Male | WormAtlas |
| R7stL | Male ray structural cell | WormAtlas |
|
| R7stR | Male ray structural cell | WormAtlas |
|
| R8shL | Male ray structural cell | WormAtlas |
|
| R8shR | Male ray structural cell | WormAtlas |
|
| R8stL | Male ray structural cell | WormAtlas |
|
| R8stR | Male ray structural cell | WormAtlas |
|
| R9shL | Male ray structural cell | Cook2019Male | WormAtlas |
| R9shR | Male ray structural cell | WormAtlas |
|
| R9stL | Male ray structural cell | WormAtlas |
|
| R9stR | Male ray structural cell | WormAtlas |