Dataset: Wang et al. 2024 (herm.)
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White_A White_L4 White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Dataset taken from Wang et al. 2024. A reader combining neurotransmitter atlas values from Wang et al. 2024 (source: elife-95402-supp2-v1.xlsx) with basic anatomical connectivity information from Cook et al. 2019 Hermaphrodite connectome, and monoaminergic receptor expression information from Bentley et al. 2015. Python Reader: Wang2024HermReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Interneurons (somatic) -
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4b of Brittin et al. 2021
BrainMap B (Brainmap)
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4b of Brittin et al. 2021
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (93, 93) matrix | 1262 non-zero entries, avg. weight: 2.342313787638669, sum: 2956.0 | ADA, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALA, ALM, ALN, AQR, ASE, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVJ, AVM, AWA, AWB, AWC, BAG, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2D, IL2V, OLL, OLQD, OLQV, PVC, PVP, Pharynx, RIA, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, URX, URYD, URYV, VNC | ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALA, ALM, ALN, AQR, ASE, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AVM, AWA, AWB, AWC, BAG, BDU, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2D, IL2V, OLL, OLQD, OLQV, PVC, PVP, PVQ, PVT, Pharynx, RIA, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, URX, URYD, URYV, VNC |
| Extrasynaptic | (93, 93) matrix | 205 non-zero entries, avg. weight: 6.64390243902439, sum: 1362.0 | ADE, ADF, CEPD, CEPV, Pharynx, RIC, RIM | ADE, ADL, AFD, AIA, AIB, AIM, AIY, AIZ, ALM, ALN, ASE, ASG, ASH, ASI, ASK, AUA, AVB, AVF, AVH, AVJ, AVM, AWB, AWC, BAG, BDU, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2D, IL2V, OLL, OLQD, OLQV, PVC, PVQ, PVT, Pharynx, RIA, RIB, RIC, RIM, RIS, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMH, SDQ, SIAD, SIAV, SIBV, SMDD, SMDV, URYD, URYV, VNC |
| Acetylcholine | (93, 93) matrix | 673 non-zero entries, avg. weight: 2.387815750371471, sum: 1607.0 | ADF, AFD, AIA, AIN, AIY, ALN, ASJ, AVA, AVB, AVD, AVE, AWA, AWB, DVA, Head/neck, IL2, IL2D, IL2V, PVC, PVP, Pharynx, RIF, RIH, RIP, RIR, RIV, RMD, RMDD, RMDV, RMF, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, URX, VNC | ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALA, ALM, ALN, AQR, ASE, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AWA, AWB, AWC, BAG, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2D, IL2V, OLL, OLQD, OLQV, PVC, PVP, PVQ, PVT, Pharynx, RIA, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, URX, URYD, URYV, VNC |
| GABA | (93, 93) matrix | 118 non-zero entries, avg. weight: 2.059322033898305, sum: 243.0 | ALA, AVJ, RIB, RIS, RME, RMED, RMEV, SMDD, SMDV, VNC | AIB, AIN, AIZ, ALM, ALN, ASG, ASH, ASJ, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AVM, BAG, CEPD, CEPV, DVC, FLP, Head/neck, IL1, IL2, OLL, PVC, PVQ, PVT, RIA, RIB, RIF, RIG, RIH, RIM, RIP, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMH, SAAV, SIAD, SIAV, SIBV, SMBD, SMDD, SMDV, URYD, URYV, VNC |
| Glutamate | (93, 93) matrix | 523 non-zero entries, avg. weight: 1.8604206500956022, sum: 973.0 | ADA, ADL, AFD, AIB, AIM, AIZ, ALM, AQR, ASE, ASG, ASH, ASK, AUA, AVM, AWC, BAG, DVA, DVC, FLP, IL1, IL1D, IL1V, OLL, OLQD, OLQV, Pharynx, RIA, RIC, RIG, RIM, URYD, URYV | ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALA, ALM, ALN, AQR, ASE, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AWA, AWB, AWC, BAG, BDU, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2D, IL2V, OLL, OLQD, OLQV, PVC, PVP, PVQ, PVT, Pharynx, RIA, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMF, RMG, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, URX, URYD, URYV, VNC |
| Betaine | (93, 93) matrix | 67 non-zero entries, avg. weight: 1.9850746268656716, sum: 133.0 | ASI, AUA, Pharynx, RIM, RIR | ADA, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, AQR, ASE, ASG, ASH, ASK, AUA, AVA, AVB, AVD, AVE, AVJ, AVK, AWA, AWB, AWC, BAG, CEPV, DVA, PVP, Pharynx, RIA, RIB, RIC, RIG, RIM, RIS, RMD, RMF, RMG, SAAD, SAAV, SMDD, SMDV, URX, VNC |
| Dopamine | (93, 93) matrix | 90 non-zero entries, avg. weight: 8.666666666666666, sum: 780.0 | ADE, CEPD, CEPV | ADE, AIM, ALM, ALN, ASE, ASG, ASK, AUA, AVF, AVM, CEPD, CEPV, FLP, Head/neck, IL2, IL2D, IL2V, PVQ, Pharynx, RIA, RIB, RIC, RIM, RIS, SIAD, SIAV, SIBV, URYD, URYV, VNC |
| Serotonin | (93, 93) matrix | 56 non-zero entries, avg. weight: 5.785714285714286, sum: 324.0 | ADF, Pharynx | AIA, AIB, AIY, AIZ, ASH, AVJ, AWB, DVA, DVC, PVQ, PVT, Pharynx, RIA, RIB, RIC, RIM, RIS, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMH, URYD, URYV, VNC |
| Tyramine | (93, 93) matrix | 47 non-zero entries, avg. weight: 4.468085106382978, sum: 210.0 | RIM | ADE, ADL, AFD, AIM, AIY, AIZ, ALM, ALN, ASE, ASG, ASH, ASI, ASK, AUA, AVB, AVH, AVM, AWC, BAG, BDU, CEPD, CEPV, DVA, Head/neck, IL1, IL1D, IL1V, OLL, OLQD, OLQV, PVC, PVT, Pharynx, RIA, RIC, RMD, RMDD, RMDV, RME, RMED, RMEV, SDQ, SIAD, SIAV, SMDD, SMDV, VNC |
| Octopamine | (93, 93) matrix | 12 non-zero entries, avg. weight: 4.0, sum: 48.0 | RIC | ADE, ADL, AIY, ASH, ASI, AWB, CEPD, CEPV, PVQ, RIC, SIAD, SIAV |
| Nodes in current view (93 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (297 total) |
Num in this dataset (297 total) |
Cells in node |
|---|---|---|---|
| OLL | 2 | 2 | OLLL, OLLR |
| URYD | 2 | 2 | URYDL, URYDR |
| URYV | 2 | 2 | URYVL, URYVR |
| CEPV | 2 | 2 | CEPVL, CEPVR |
| CEPD | 2 | 2 | CEPDL, CEPDR |
| IL2D | 2 | 2 | IL2DL, IL2DR |
| IL2V | 2 | 2 | IL2VL, IL2VR |
| OLQV | 2 | 2 | OLQVL, OLQVR |
| OLQD | 2 | 2 | OLQDL, OLQDR |
| IL1D | 2 | 2 | IL1DL, IL1DR |
| IL1V | 2 | 2 | IL1VL, IL1VR |
| IL1 | 2 | 2 | IL1L, IL1R |
| IL2 | 2 | 2 | IL2L, IL2R |
| ADE | 2 | 2 | ADEL, ADER |
| AQR | 1 | 1 | AQR |
| FLP | 2 | 2 | FLPL, FLPR |
| AVM | 1 | 1 | AVM |
| ALM | 2 | 2 | ALML, ALMR |
| ASH | 2 | 2 | ASHL, ASHR |
| ASK | 2 | 2 | ASKL, ASKR |
| ASJ | 2 | 2 | ASJL, ASJR |
| ASG | 2 | 2 | ASGL, ASGR |
| URX | 2 | 2 | URXL, URXR |
| AFD | 2 | 2 | AFDL, AFDR |
| AWA | 2 | 2 | AWAL, AWAR |
| ASI | 2 | 2 | ASIL, ASIR |
| BAG | 2 | 2 | BAGL, BAGR |
| ADF | 2 | 2 | ADFL, ADFR |
| AWB | 2 | 2 | AWBL, AWBR |
| ADL | 2 | 2 | ADLL, ADLR |
| ASE | 2 | 2 | ASEL, ASER |
| AWC | 2 | 2 | AWCL, AWCR |
| URAD | 2 | 2 | URADL, URADR |
| URAV | 2 | 2 | URAVL, URAVR |
| RIP | 2 | 2 | RIPL, RIPR |
| ALN | 2 | 2 | ALNL, ALNR |
| PVT | 1 | 1 | PVT |
| SDQ | 2 | 2 | SDQL, SDQR |
| BDU | 2 | 2 | BDUL, BDUR |
| AVJ | 2 | 2 | AVJL, AVJR |
| AIM | 2 | 2 | AIML, AIMR |
| AIN | 2 | 2 | AINL, AINR |
| AIY | 2 | 2 | AIYL, AIYR |
| PVQ | 2 | 2 | PVQL, PVQR |
| AIA | 2 | 2 | AIAL, AIAR |
| RMEV | 1 | 1 | RMEV |
| RIH | 1 | 1 | RIH |
| AVE | 2 | 2 | AVEL, AVER |
| RME | 2 | 2 | RMEL, RMER |
| RIA | 2 | 2 | RIAL, RIAR |
| RMDV | 2 | 2 | RMDVL, RMDVR |
| RMED | 1 | 1 | RMED |
| RMDD | 2 | 2 | RMDDL, RMDDR |
| RMF | 2 | 2 | RMFL, RMFR |
| AVK | 2 | 2 | AVKL, AVKR |
| RIG | 2 | 2 | RIGL, RIGR |
| DVC | 1 | 1 | DVC |
| RIS | 1 | 1 | RIS |
| RIM | 2 | 2 | RIML, RIMR |
| SMDD | 2 | 2 | SMDDL, SMDDR |
| SAAV | 2 | 2 | SAAVL, SAAVR |
| SAAD | 2 | 2 | SAADL, SAADR |
| RIV | 2 | 2 | RIVL, RIVR |
| SMDV | 2 | 2 | SMDVL, SMDVR |
| RMD | 2 | 2 | RMDL, RMDR |
| AVA | 2 | 2 | AVAL, AVAR |
| RMH | 2 | 2 | RMHL, RMHR |
| RMG | 2 | 2 | RMGL, RMGR |
| DVA | 1 | 1 | DVA |
| SMBD | 2 | 2 | SMBDL, SMBDR |
| SIBV | 2 | 2 | SIBVL, SIBVR |
| SMBV | 2 | 2 | SMBVL, SMBVR |
| SIAV | 2 | 2 | SIAVL, SIAVR |
| SIAD | 2 | 2 | SIADL, SIADR |
| RIC | 2 | 2 | RICL, RICR |
| URB | 2 | 2 | URBL, URBR |
| ADA | 2 | 2 | ADAL, ADAR |
| AVB | 2 | 2 | AVBL, AVBR |
| PVP | 2 | 2 | PVPL, PVPR |
| PVC | 2 | 2 | PVCL, PVCR |
| AVH | 2 | 2 | AVHL, AVHR |
| RIF | 2 | 2 | RIFL, RIFR |
| AVD | 2 | 2 | AVDL, AVDR |
| RIR | 1 | 1 | RIR |
| AVF | 2 | 2 | AVFL, AVFR |
| AUA | 2 | 2 | AUAL, AUAR |
| RIB | 2 | 2 | RIBL, RIBR |
| AIZ | 2 | 2 | AIZL, AIZR |
| AIB | 2 | 2 | AIBL, AIBR |
| ALA | 1 | 1 | ALA |
| Pharynx | 20 | 20 | I1L, I1R, I2L, I2R, I3, I4, I5, I6, M1, M2L, M2R, M3L, M3R, M4, M5, MCL, MCR, MI, NSML, NSMR |
| Head/neck | 37 | 37 | RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, RMHR, SABD, SABVL, SABVR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR, URADL, URADR, URAVL, URAVR |
| VNC | 71 | 71 | AS1, AS10, AS11, AS2, AS3, AS4, AS5, AS6, AS7, AS8, AS9, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, DD1, DD2, DD3, DD4, DD5, DD6, PDA, PDB, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |