Dataset: Ripoll Sanchez et al. 2023 (long range)
Dataset of neuropeptidergic connections between any neuron pair regardless of anatomical location
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from RipollSanchez et al. 2023. Data extracted from 01022024_neuropeptide_connectome_long_range_model.csv for long range model of neuropedtidergic connectome. Python Reader: RipollSanchezLongRangeReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Hub and spoke circuit for social behavior as in Macosko et al. 2009
Social Network (Social)
Hub and spoke circuit for social behavior as in Macosko et al. 2009
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Extrasynaptic | (8, 8) matrix | 49 non-zero entries 6 nodes with self-connections Avg. weight: 13.061224 Sum of weights: 640.0 |
ADL, ASH, ASK, AWB, IL2, RMG, RMH, URX | ADL, ASH, ASK, AWB, IL2, RMG, RMH, URX |
| Nodes in current view (8 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (16 total) |
Num in this dataset (16 total) |
Cells in node |
|---|---|---|---|
| ADL | 2 | 2 | ADLL, ADLR |
| ASH | 2 | 2 | ASHL, ASHR |
| ASK | 2 | 2 | ASKL, ASKR |
| AWB | 2 | 2 | AWBL, AWBR |
| IL2 | 2 | 2 | IL2L, IL2R |
| RMG | 2 | 2 | RMGL, RMGR |
| RMH | 2 | 2 | RMHL, RMHR |
| URX | 2 | 2 | URXL, URXR |
Weight definition: Weights indicate the number of different NPP-GPCR pathways connecting a neuron pair in a given direction.
Validation tests: See here