Dataset: Cook et al. 2019 (male)
Chemical and electrical connectivity of the male from Cook et al. 2019, including connections between neurons, muscles and other cells.
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from Cook et al. 2019. Data extracted from SI 5 Connectome adjacency matrices, corrected July 2020.xlsx for neuronal connectivity of male. Python Reader: Cook2019MaleReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
All hermaphrodite sensory neurons except those in the pharynx
Sensory Neurons (somatic) (SensorySomaticH)
All hermaphrodite sensory neurons except those in the pharynx
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (83, 83) matrix | 167 non-zero entries 7 nodes with self-connections Avg. weight: 7.125749 Sum of weights: 1190.0 |
ADEL, ADER, ADFL, ADFR, ADLL, ADLR, AFDR, ALML, ALMR, AQR, ASEL, ASER, ASGL, ASHL, ASHR, ASIL, ASIR, ASJL, ASJR, ASKL, ASKR, AWAL, AWAR, AWBL, AWBR, AWCL, BAGL, CEPDL, CEPDR, CEPVL, CEPVR, DVA, FLPL, FLPR, IL1DR, IL1VL, IL1VR, IL2DL, IL2DR, IL2L, IL2R, IL2VL, IL2VR, OLLL, OLLR, OLQDL, OLQDR, OLQVL, OLQVR, PDEL, PDER, PHAL, PHAR, PHBL, PHBR, PHCL, PHCR, PLML, PLMR, PVDL, PVDR, PVM, SDQR, URXR | ADEL, ADER, ADFL, ADFR, ADLL, ADLR, AFDL, AFDR, ALMR, AQR, ASEL, ASER, ASGL, ASGR, ASHL, ASHR, ASIL, ASKL, ASKR, AWAL, AWAR, AWBL, AWBR, AWCL, AWCR, BAGL, CEPDL, CEPDR, CEPVL, CEPVR, DVA, FLPL, FLPR, IL1DL, IL1DR, IL1L, IL1R, IL1VL, IL1VR, IL2DL, IL2L, IL2R, IL2VL, IL2VR, OLLR, OLQDL, OLQDR, OLQVL, OLQVR, PDEL, PDER, PHAL, PHAR, PHBL, PHBR, PHCL, PHCR, PQR, PVDL, PVDR, PVM, SDQL, SDQR, URXL, URXR, URYDR |
| Electrical | (83, 83) matrix | 104 non-zero entries 2 nodes with self-connections Matrix is symmetric with 53 unique pairs (total unique pair weight: 448.0) Avg. weight: 8.567308 Sum of weights: 891.0 |
ADFR, ADLL, ADLR, AFDL, AFDR, ALML, ALMR, ASEL, ASIL, ASIR, ASJL, ASKL, ASKR, AVM, CEPDL, CEPDR, CEPVL, CEPVR, DVA, FLPL, IL1DR, IL1L, IL1R, IL1VL, IL1VR, IL2DL, IL2DR, IL2L, IL2R, IL2VL, OLLL, OLLR, OLQDL, OLQDR, OLQVL, OLQVR, PDEL, PDER, PHAL, PHAR, PHBL, PHBR, PHCL, PHCR, PLML, PLMR, PQR, PVDL, PVDR, PVM, SDQR, URXL, URXR | ADFR, ADLL, ADLR, AFDL, AFDR, ALML, ALMR, ASEL, ASIL, ASIR, ASJL, ASKL, ASKR, AVM, CEPDL, CEPDR, CEPVL, CEPVR, DVA, FLPL, IL1DR, IL1L, IL1R, IL1VL, IL1VR, IL2DL, IL2DR, IL2L, IL2R, IL2VL, OLLL, OLLR, OLQDL, OLQDR, OLQVL, OLQVR, PDEL, PDER, PHAL, PHAR, PHBL, PHBR, PHCL, PHCR, PLML, PLMR, PQR, PVDL, PVDR, PVM, SDQR, URXL, URXR |
| Nodes in current view (83 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (83 total) |
Num in this dataset (82 total) |
Cells in node |
|---|---|---|---|
| ADEL | 1 | 1 | ADEL |
| ADER | 1 | 1 | ADER |
| ADFL | 1 | 1 | ADFL |
| ADFR | 1 | 1 | ADFR |
| ADLL | 1 | 1 | ADLL |
| ADLR | 1 | 1 | ADLR |
| AFDL | 1 | 1 | AFDL |
| AFDR | 1 | 1 | AFDR |
| ALML | 1 | 1 | ALML |
| ALMR | 1 | 1 | ALMR |
| ALNL | 1 | 1 | ALNL |
| ALNR | 1 | 1 | ALNR |
| AQR | 1 | 1 | AQR |
| ASEL | 1 | 1 | ASEL |
| ASER | 1 | 1 | ASER |
| ASGL | 1 | 1 | ASGL |
| ASGR | 1 | 1 | ASGR |
| ASHL | 1 | 1 | ASHL |
| ASHR | 1 | 1 | ASHR |
| ASIL | 1 | 1 | ASIL |
| ASIR | 1 | 1 | ASIR |
| ASJL | 1 | 1 | ASJL |
| ASJR | 1 | 1 | ASJR |
| ASKL | 1 | 1 | ASKL |
| ASKR | 1 | 1 | ASKR |
| AVM | 1 | 1 | AVM |
| AWAL | 1 | 1 | AWAL |
| AWAR | 1 | 1 | AWAR |
| AWBL | 1 | 1 | AWBL |
| AWBR | 1 | 1 | AWBR |
| AWCL | 1 | 1 | AWCL |
| AWCR | 1 | 1 | AWCR |
| BAGL | 1 | 1 | BAGL |
| BAGR | 1 | 0 | BAGR |
| CEPDL | 1 | 1 | CEPDL |
| CEPDR | 1 | 1 | CEPDR |
| CEPVL | 1 | 1 | CEPVL |
| CEPVR | 1 | 1 | CEPVR |
| DVA | 1 | 1 | DVA |
| FLPL | 1 | 1 | FLPL |
| FLPR | 1 | 1 | FLPR |
| IL1DL | 1 | 1 | IL1DL |
| IL1DR | 1 | 1 | IL1DR |
| IL1L | 1 | 1 | IL1L |
| IL1R | 1 | 1 | IL1R |
| IL1VL | 1 | 1 | IL1VL |
| IL1VR | 1 | 1 | IL1VR |
| IL2DL | 1 | 1 | IL2DL |
| IL2DR | 1 | 1 | IL2DR |
| IL2L | 1 | 1 | IL2L |
| IL2R | 1 | 1 | IL2R |
| IL2VL | 1 | 1 | IL2VL |
| IL2VR | 1 | 1 | IL2VR |
| OLLL | 1 | 1 | OLLL |
| OLLR | 1 | 1 | OLLR |
| OLQDL | 1 | 1 | OLQDL |
| OLQDR | 1 | 1 | OLQDR |
| OLQVL | 1 | 1 | OLQVL |
| OLQVR | 1 | 1 | OLQVR |
| PDEL | 1 | 1 | PDEL |
| PDER | 1 | 1 | PDER |
| PHAL | 1 | 1 | PHAL |
| PHAR | 1 | 1 | PHAR |
| PHBL | 1 | 1 | PHBL |
| PHBR | 1 | 1 | PHBR |
| PHCL | 1 | 1 | PHCL |
| PHCR | 1 | 1 | PHCR |
| PLML | 1 | 1 | PLML |
| PLMR | 1 | 1 | PLMR |
| PLNL | 1 | 1 | PLNL |
| PLNR | 1 | 1 | PLNR |
| PQR | 1 | 1 | PQR |
| PVDL | 1 | 1 | PVDL |
| PVDR | 1 | 1 | PVDR |
| PVM | 1 | 1 | PVM |
| SDQL | 1 | 1 | SDQL |
| SDQR | 1 | 1 | SDQR |
| URXL | 1 | 1 | URXL |
| URXR | 1 | 1 | URXR |
| URYDL | 1 | 1 | URYDL |
| URYDR | 1 | 1 | URYDR |
| URYVL | 1 | 1 | URYVL |
| URYVR | 1 | 1 | URYVR |
Validation tests: See here