Dataset: Randi et al. 2023
Data on functional connectivity of C. elegans from WormNeuroAtlas Python package (values extracted with get_signal_propagation_map() & get_signal_propagation_q(), with max_q = 0.05)
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from Randi et al. 2023. Data on functional connectivity from the WormNeuroAtlas package. Python Reader: WormNeuroAtlasFuncReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Only the 20 neurons of the pharynx (whether present or not in the connectome dataset)
Pharynx (Pharynx)
Only the 20 neurons of the pharynx (whether present or not in the connectome dataset)
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Functional | (20, 20) matrix | 90 non-zero entries Avg. weight: 0.255448 Sum of weights: 22.9902937081988 |
I2L, I2R, I3, I4, I6, M1, M2L, M3L, M3R, M5, MCL, MCR, MI, NSML, NSMR | I1L, I1R, I2L, I2R, I3, I4, I6, M1, M2L, M2R, M3L, M3R, M4, M5, MCL, MCR, MI, NSML, NSMR |
| Nodes in current view (20 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (20 total) |
Num in this dataset (19 total) |
Cells in node |
|---|---|---|---|
| I1L | 1 | 1 | I1L |
| I1R | 1 | 1 | I1R |
| I2L | 1 | 1 | I2L |
| I2R | 1 | 1 | I2R |
| I3 | 1 | 1 | I3 |
| I4 | 1 | 1 | I4 |
| I5 | 1 | 0 | I5 |
| I6 | 1 | 1 | I6 |
| M1 | 1 | 1 | M1 |
| M2L | 1 | 1 | M2L |
| M2R | 1 | 1 | M2R |
| M3L | 1 | 1 | M3L |
| M3R | 1 | 1 | M3R |
| M4 | 1 | 1 | M4 |
| M5 | 1 | 1 | M5 |
| MCL | 1 | 1 | MCL |
| MCR | 1 | 1 | MCR |
| MI | 1 | 1 | MI |
| NSML | 1 | 1 | NSML |
| NSMR | 1 | 1 | NSMR |
Weight definition: Weights represent the mean post-stimulus calcium response amplitude measured in a downstream neuron following two-photon optogenetic stimulation of an upstream neuron
Validation tests: See here