Dataset: WormNeuroAtlas
Data from the WormNeuroAtlas package for neuronal connectivity. NOTE: only for testing, not validated against a specific published dataset.
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from Randi et al. 2023. Data from the WormNeuroAtlas package for neuronal connectivity. NOTE: only for testing, not validated against a specific published dataset.. Python Reader: WormNeuroAtlasReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Peptidergic hubs as outlined in in Ripoll-Sánchez et al. 2023, Fig 7E
Peptidergic Hubs (PeptidergicHubs)
Peptidergic hubs as outlined in in Ripoll-Sánchez et al. 2023, Fig 7E
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (4, 4) matrix | 9 non-zero entries 3 nodes with self-connections Avg. weight: 1478.000000 Sum of weights: 13302.0 |
Hubs, Periphery, Sensory core | Hubs, Periphery, Sensory core |
| Electrical | (4, 4) matrix | 9 non-zero entries 3 nodes with self-connections Matrix is symmetric with 6 unique pairs (total unique pair weight: 1078.0) Avg. weight: 170.777778 Sum of weights: 1537.0 |
Hubs, Periphery, Sensory core | Hubs, Periphery, Sensory core |
| Acetylcholine | (4, 4) matrix | 9 non-zero entries 3 nodes with self-connections Avg. weight: 504.777778 Sum of weights: 4543.0 |
Hubs, Periphery, Sensory core | Hubs, Periphery, Sensory core |
| GABA | (4, 4) matrix | 9 non-zero entries 3 nodes with self-connections Avg. weight: 63.444444 Sum of weights: 571.0 |
Hubs, Periphery, Sensory core | Hubs, Periphery, Sensory core |
| Glutamate | (4, 4) matrix | 9 non-zero entries 3 nodes with self-connections Avg. weight: 705.444444 Sum of weights: 6349.0 |
Hubs, Periphery, Sensory core | Hubs, Periphery, Sensory core |
| OtherChemicalNT | (4, 4) matrix | 9 non-zero entries 3 nodes with self-connections Avg. weight: 204.333333 Sum of weights: 1839.0 |
Hubs, Periphery, Sensory core | Hubs, Periphery, Sensory core |
Weight definition: This dataset is only for testing WormNeuroAtlas. It is not validated against a specific published dataset.
Validation tests: See here