Dataset: Wang et al. 2024 (herm.)
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White_A White_L4 White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Dataset taken from Wang et al. 2024. A reader combining neurotransmitter atlas values from Wang et al. 2024 (source: elife-95402-supp2-v1.xlsx) with basic anatomical connectivity information from Cook et al. 2019 Hermaphrodite connectome, and monoaminergic receptor expression information from Bentley et al. 2015. Python Reader: Wang2024HermReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Peptidergic hubs as outlined in in Ripoll-Sánchez et al. 2023, Fig 7E
No plottable connections of this type...
No plottable connections of this type...
No plottable connections of this type...
No plottable connections of this type...
No plottable connections of this type...
No plottable connections of this type...
No plottable connections of this type...
No plottable connections of this type...
No plottable connections of this type...
No plottable connections of this type...
Peptidergic Hubs (PeptidergicHubs)
Peptidergic hubs as outlined in in Ripoll-Sánchez et al. 2023, Fig 7E
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (4, 4) matrix | 14 non-zero entries 4 nodes with self-connections Avg. weight: 253.071429 Sum of weights: 3543.0 |
Hubs, Motor core, Periphery, Sensory core | Hubs, Motor core, Periphery, Sensory core |
| Extrasynaptic | (4, 4) matrix | 11 non-zero entries 3 nodes with self-connections Avg. weight: 175.636364 Sum of weights: 1932.0 |
Hubs, Periphery, Sensory core | Hubs, Motor core, Periphery, Sensory core |
| Acetylcholine | (4, 4) matrix | 14 non-zero entries 4 nodes with self-connections Avg. weight: 135.714286 Sum of weights: 1900.0 |
Hubs, Motor core, Periphery, Sensory core | Hubs, Motor core, Periphery, Sensory core |
| GABA | (4, 4) matrix | 11 non-zero entries 3 nodes with self-connections Avg. weight: 25.636364 Sum of weights: 282.0 |
Hubs, Periphery, Sensory core | Hubs, Motor core, Periphery, Sensory core |
| Glutamate | (4, 4) matrix | 14 non-zero entries 4 nodes with self-connections Avg. weight: 87.642857 Sum of weights: 1227.0 |
Hubs, Motor core, Periphery, Sensory core | Hubs, Motor core, Periphery, Sensory core |
| Betaine | (4, 4) matrix | 6 non-zero entries 2 nodes with self-connections Avg. weight: 22.333333 Sum of weights: 134.0 |
Periphery, Sensory core | Hubs, Periphery, Sensory core |
| Dopamine | (4, 4) matrix | 4 non-zero entries 1 nodes with self-connections Avg. weight: 290.000000 Sum of weights: 1160.0 |
Periphery | Hubs, Motor core, Periphery, Sensory core |
| Serotonin | (4, 4) matrix | 9 non-zero entries 3 nodes with self-connections Avg. weight: 54.666667 Sum of weights: 492.0 |
Hubs, Periphery, Sensory core | Hubs, Periphery, Sensory core |
| Tyramine | (4, 4) matrix | 4 non-zero entries 1 nodes with self-connections Avg. weight: 56.000000 Sum of weights: 224.0 |
Sensory core | Hubs, Motor core, Periphery, Sensory core |
| Octopamine | (4, 4) matrix | 3 non-zero entries 1 nodes with self-connections Avg. weight: 18.666667 Sum of weights: 56.0 |
Sensory core | Hubs, Periphery, Sensory core |