Dataset: Gleeson et al. 2018 (model)
Data extracted from a NeuroML file for the computational model from Gleeson et al. 2018
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from GleesonModel. Data extracted from a NeuroML file based on Gleeson et al. 2018. Python Reader: GleesonModelReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Peptidergic hubs as outlined in in Ripoll-Sánchez et al. 2023, Fig 7E
Peptidergic Hubs (PeptidergicHubs)
Peptidergic hubs as outlined in in Ripoll-Sánchez et al. 2023, Fig 7E
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (4, 4) matrix | 8 non-zero entries 3 nodes with self-connections Avg. weight: 14.250000 Sum of weights: 114.0 |
Hubs, Motor core, Periphery | Hubs, Motor core, Periphery |
| Electrical | (4, 4) matrix | 7 non-zero entries 3 nodes with self-connections Matrix is symmetric with 5 unique pairs (total unique pair weight: 130.0) Avg. weight: 23.571429 Sum of weights: 165.0 |
Hubs, Motor core, Periphery | Hubs, Motor core, Periphery |
| ExcitatoryChem | (4, 4) matrix | 5 non-zero entries 2 nodes with self-connections Avg. weight: 11.400000 Sum of weights: 57.0 |
Hubs, Motor core | Hubs, Motor core, Periphery |
| InhibitoryChem | (4, 4) matrix | 5 non-zero entries 1 nodes with self-connections Avg. weight: 11.400000 Sum of weights: 57.0 |
Hubs, Motor core, Periphery | Hubs, Motor core, Periphery |
Weight definition: Weights are based on the scaling factor for the synaptic contacts from neuron A to neuron B, as specified in the NeuroML file.
Validation tests: See here