Dataset: Cook et al. 2020
Chemical and electrical connectivity of the C. elegans pharynx, from Cook et al 2020, including connections between pharyngeal neurons, muscles and other cells (epithelial, gland and marginal).
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from Cook et al. 2020. Data extracted from cne24932-sup-0004-supinfo4.csv and cne24932-sup-0005-supinfo5.csv for connectivity of pharyngeal neurons, muscles and other cells. Python Reader: Cook2020DataReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Peptidergic hubs as outlined in in Ripoll-Sánchez et al. 2023, Fig 7E
Peptidergic Hubs (PeptidergicHubs)
Peptidergic hubs as outlined in in Ripoll-Sánchez et al. 2023, Fig 7E
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (4, 4) matrix | 4 non-zero entries 2 nodes with self-connections Avg. weight: 170.750000 Sum of weights: 683.0 |
Periphery, Sensory core | Periphery, Sensory core |
| Electrical | (4, 4) matrix | 4 non-zero entries 2 nodes with self-connections Matrix is symmetric with 3 unique pairs (total unique pair weight: 95.0) Avg. weight: 29.500000 Sum of weights: 118.0 |
Periphery, Sensory core | Periphery, Sensory core |
Weight definition: Weights are the total number of serial EM sections across which presynaptic specializations are visible, summed across all individual synapses contributing to that connection
Validation tests: See here