Dataset: OpenWormUnified
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from OpenWorm_Unified. A reader combining neurotransmitter atlas values from Wang et al. 2024 (source: elife-95402-supp2-v1.xlsx) with basic anatomical connectivity information from Cook et al. 2019 Hermaphrodite connectome, and monoaminergic receptor expression information from Bentley et al. 2016. Python Reader: OpenWormUnifiedReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
All hermaphrodite motor neurons except those in the pharynx
Motor Neurons (somatic) (MotorSomaticH)
All hermaphrodite motor neurons except those in the pharynx
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (116, 116) matrix | 577 non-zero entries 8 nodes with self-connections Avg. weight: 6.490468 Sum of weights: 3745.0 |
AS1, AS10, AS11, AS2, AS3, AS4, AS5, AS6, AS7, AS8, AS9, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, DD1, DD2, DD3, DD6, HSNL, HSNR, PDA, PDB, RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, RMHR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR, URADL, URADR, URAVL, URAVR, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VC1, VC2, VC3, VC4, VC5, VC6, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 | AS1, AS10, AS11, AS2, AS3, AS4, AS5, AS6, AS7, AS8, AS9, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, DD1, DD2, DD3, DD4, DD5, DD6, HSNL, HSNR, RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, RMHR, SABD, SABVL, SABVR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR, URAVL, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VC1, VC2, VC3, VC4, VC5, VC6, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |
| Electrical | (116, 116) matrix | 365 non-zero entries 3 nodes with self-connections Matrix is symmetric with 184 unique pairs (total unique pair weight: 607.0) Avg. weight: 3.304110 Sum of weights: 1206.0 |
AS1, AS10, AS11, AS2, AS3, AS4, AS6, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, DD1, DD2, DD3, DD4, DD5, DD6, HSNL, HSNR, PDA, PDB, RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, SABD, SABVR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VC1, VC2, VC3, VC4, VC5, VC6, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 | AS1, AS10, AS11, AS2, AS3, AS4, AS6, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, DD1, DD2, DD3, DD4, DD5, DD6, HSNL, HSNR, PDA, PDB, RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, SABD, SABVR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VC1, VC2, VC3, VC4, VC5, VC6, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |
| Acetylcholine | (116, 116) matrix | 513 non-zero entries 5 nodes with self-connections Avg. weight: 6.430799 Sum of weights: 3299.0 |
AS1, AS10, AS11, AS2, AS3, AS4, AS5, AS6, AS7, AS8, AS9, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, HSNL, HSNR, PDA, PDB, RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMHL, RMHR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR, URADL, URADR, URAVL, URAVR, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VC1, VC2, VC3, VC4, VC5, VC6 | AS1, AS10, AS11, AS2, AS3, AS4, AS5, AS6, AS7, AS8, AS9, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, DD1, DD2, DD3, DD4, DD5, DD6, HSNL, HSNR, RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, RMHR, SABD, SABVL, SABVR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR, URAVL, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VC1, VC2, VC3, VC4, VC5, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |
| GABA | (116, 116) matrix | 95 non-zero entries 3 nodes with self-connections Avg. weight: 4.694737 Sum of weights: 446.0 |
DD1, DD2, DD3, DD6, RMED, RMEL, RMER, RMEV, SMDDL, SMDDR, SMDVL, SMDVR, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 | AS1, DA2, DA3, DA5, DB7, DD1, DD3, DD4, DD6, RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMED, RMER, RMEV, RMHR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMDDL, SMDDR, SMDVL, SMDVR, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VC6, VD12, VD13, VD2, VD3, VD4 |
| Nodes in current view (116 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (116 total) |
Num in this dataset (116 total) |
Cells in node |
|---|---|---|---|
| AS1 | 1 | 1 | AS1 |
| AS10 | 1 | 1 | AS10 |
| AS11 | 1 | 1 | AS11 |
| AS2 | 1 | 1 | AS2 |
| AS3 | 1 | 1 | AS3 |
| AS4 | 1 | 1 | AS4 |
| AS5 | 1 | 1 | AS5 |
| AS6 | 1 | 1 | AS6 |
| AS7 | 1 | 1 | AS7 |
| AS8 | 1 | 1 | AS8 |
| AS9 | 1 | 1 | AS9 |
| DA1 | 1 | 1 | DA1 |
| DA2 | 1 | 1 | DA2 |
| DA3 | 1 | 1 | DA3 |
| DA4 | 1 | 1 | DA4 |
| DA5 | 1 | 1 | DA5 |
| DA6 | 1 | 1 | DA6 |
| DA7 | 1 | 1 | DA7 |
| DA8 | 1 | 1 | DA8 |
| DA9 | 1 | 1 | DA9 |
| DB1 | 1 | 1 | DB1 |
| DB2 | 1 | 1 | DB2 |
| DB3 | 1 | 1 | DB3 |
| DB4 | 1 | 1 | DB4 |
| DB5 | 1 | 1 | DB5 |
| DB6 | 1 | 1 | DB6 |
| DB7 | 1 | 1 | DB7 |
| DD1 | 1 | 1 | DD1 |
| DD2 | 1 | 1 | DD2 |
| DD3 | 1 | 1 | DD3 |
| DD4 | 1 | 1 | DD4 |
| DD5 | 1 | 1 | DD5 |
| DD6 | 1 | 1 | DD6 |
| HSNL | 1 | 1 | HSNL |
| HSNR | 1 | 1 | HSNR |
| PDA | 1 | 1 | PDA |
| PDB | 1 | 1 | PDB |
| RIVL | 1 | 1 | RIVL |
| RIVR | 1 | 1 | RIVR |
| RMDDL | 1 | 1 | RMDDL |
| RMDDR | 1 | 1 | RMDDR |
| RMDL | 1 | 1 | RMDL |
| RMDR | 1 | 1 | RMDR |
| RMDVL | 1 | 1 | RMDVL |
| RMDVR | 1 | 1 | RMDVR |
| RMED | 1 | 1 | RMED |
| RMEL | 1 | 1 | RMEL |
| RMER | 1 | 1 | RMER |
| RMEV | 1 | 1 | RMEV |
| RMHL | 1 | 1 | RMHL |
| RMHR | 1 | 1 | RMHR |
| SABD | 1 | 1 | SABD |
| SABVL | 1 | 1 | SABVL |
| SABVR | 1 | 1 | SABVR |
| SIADL | 1 | 1 | SIADL |
| SIADR | 1 | 1 | SIADR |
| SIAVL | 1 | 1 | SIAVL |
| SIAVR | 1 | 1 | SIAVR |
| SIBDL | 1 | 1 | SIBDL |
| SIBDR | 1 | 1 | SIBDR |
| SIBVL | 1 | 1 | SIBVL |
| SIBVR | 1 | 1 | SIBVR |
| SMBDL | 1 | 1 | SMBDL |
| SMBDR | 1 | 1 | SMBDR |
| SMBVL | 1 | 1 | SMBVL |
| SMBVR | 1 | 1 | SMBVR |
| SMDDL | 1 | 1 | SMDDL |
| SMDDR | 1 | 1 | SMDDR |
| SMDVL | 1 | 1 | SMDVL |
| SMDVR | 1 | 1 | SMDVR |
| URADL | 1 | 1 | URADL |
| URADR | 1 | 1 | URADR |
| URAVL | 1 | 1 | URAVL |
| URAVR | 1 | 1 | URAVR |
| VA1 | 1 | 1 | VA1 |
| VA10 | 1 | 1 | VA10 |
| VA11 | 1 | 1 | VA11 |
| VA12 | 1 | 1 | VA12 |
| VA2 | 1 | 1 | VA2 |
| VA3 | 1 | 1 | VA3 |
| VA4 | 1 | 1 | VA4 |
| VA5 | 1 | 1 | VA5 |
| VA6 | 1 | 1 | VA6 |
| VA7 | 1 | 1 | VA7 |
| VA8 | 1 | 1 | VA8 |
| VA9 | 1 | 1 | VA9 |
| VB1 | 1 | 1 | VB1 |
| VB10 | 1 | 1 | VB10 |
| VB11 | 1 | 1 | VB11 |
| VB2 | 1 | 1 | VB2 |
| VB3 | 1 | 1 | VB3 |
| VB4 | 1 | 1 | VB4 |
| VB5 | 1 | 1 | VB5 |
| VB6 | 1 | 1 | VB6 |
| VB7 | 1 | 1 | VB7 |
| VB8 | 1 | 1 | VB8 |
| VB9 | 1 | 1 | VB9 |
| VC1 | 1 | 1 | VC1 |
| VC2 | 1 | 1 | VC2 |
| VC3 | 1 | 1 | VC3 |
| VC4 | 1 | 1 | VC4 |
| VC5 | 1 | 1 | VC5 |
| VC6 | 1 | 1 | VC6 |
| VD1 | 1 | 1 | VD1 |
| VD10 | 1 | 1 | VD10 |
| VD11 | 1 | 1 | VD11 |
| VD12 | 1 | 1 | VD12 |
| VD13 | 1 | 1 | VD13 |
| VD2 | 1 | 1 | VD2 |
| VD3 | 1 | 1 | VD3 |
| VD4 | 1 | 1 | VD4 |
| VD5 | 1 | 1 | VD5 |
| VD6 | 1 | 1 | VD6 |
| VD7 | 1 | 1 | VD7 |
| VD8 | 1 | 1 | VD8 |
| VD9 | 1 | 1 | VD9 |
Validation tests: See here