Dataset: Bentley et al. 2016 (monoamin.)
Data on monoaminergic connectivity from Bentley et al. 2016 (i.e. dopaminergic, tyraminergic, octopaminergic & serotonergic extracellular transmission).
Choose Dataset
WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from Bentley et al. 2016. Data extracted from edgelist_MA.csv for monoaminergic connectivity of Bentley et al. 2016. Python Reader: Bentley2016MAReader
Choose View
Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
All hermaphrodite motor neurons except those in the pharynx
Motor Neurons (somatic) (MotorSomaticH)
All hermaphrodite motor neurons except those in the pharynx
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Extrasynaptic | (116, 116) matrix | 62 non-zero entries Avg. weight: 1.000000 Sum of weights: 62.0 |
HSNL, HSNR | DD1, DD2, DD3, DD4, DD5, DD6, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, RMHR, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |
| Serotonin | (116, 116) matrix | 62 non-zero entries Avg. weight: 1.000000 Sum of weights: 62.0 |
HSNL, HSNR | DD1, DD2, DD3, DD4, DD5, DD6, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, RMHR, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |
| Nodes in current view (116 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (116 total) |
Num in this dataset (99 total) |
Cells in node |
|---|---|---|---|
| AS1 | 1 | 1 | AS1 |
| AS10 | 1 | 1 | AS10 |
| AS11 | 1 | 1 | AS11 |
| AS2 | 1 | 1 | AS2 |
| AS3 | 1 | 1 | AS3 |
| AS4 | 1 | 1 | AS4 |
| AS5 | 1 | 1 | AS5 |
| AS6 | 1 | 1 | AS6 |
| AS7 | 1 | 1 | AS7 |
| AS8 | 1 | 1 | AS8 |
| AS9 | 1 | 1 | AS9 |
| DA1 | 1 | 1 | DA1 |
| DA2 | 1 | 1 | DA2 |
| DA3 | 1 | 1 | DA3 |
| DA4 | 1 | 1 | DA4 |
| DA5 | 1 | 1 | DA5 |
| DA6 | 1 | 1 | DA6 |
| DA7 | 1 | 1 | DA7 |
| DA8 | 1 | 1 | DA8 |
| DA9 | 1 | 1 | DA9 |
| DB1 | 1 | 1 | DB1 |
| DB2 | 1 | 1 | DB2 |
| DB3 | 1 | 1 | DB3 |
| DB4 | 1 | 1 | DB4 |
| DB5 | 1 | 1 | DB5 |
| DB6 | 1 | 1 | DB6 |
| DB7 | 1 | 1 | DB7 |
| DD1 | 1 | 1 | DD1 |
| DD2 | 1 | 1 | DD2 |
| DD3 | 1 | 1 | DD3 |
| DD4 | 1 | 1 | DD4 |
| DD5 | 1 | 1 | DD5 |
| DD6 | 1 | 1 | DD6 |
| HSNL | 1 | 1 | HSNL |
| HSNR | 1 | 1 | HSNR |
| PDA | 1 | 1 | PDA |
| PDB | 1 | 0 | PDB |
| RIVL | 1 | 0 | RIVL |
| RIVR | 1 | 0 | RIVR |
| RMDDL | 1 | 1 | RMDDL |
| RMDDR | 1 | 1 | RMDDR |
| RMDL | 1 | 1 | RMDL |
| RMDR | 1 | 1 | RMDR |
| RMDVL | 1 | 1 | RMDVL |
| RMDVR | 1 | 1 | RMDVR |
| RMED | 1 | 1 | RMED |
| RMEL | 1 | 1 | RMEL |
| RMER | 1 | 1 | RMER |
| RMEV | 1 | 1 | RMEV |
| RMHL | 1 | 1 | RMHL |
| RMHR | 1 | 1 | RMHR |
| SABD | 1 | 1 | SABD |
| SABVL | 1 | 1 | SABVL |
| SABVR | 1 | 1 | SABVR |
| SIADL | 1 | 1 | SIADL |
| SIADR | 1 | 1 | SIADR |
| SIAVL | 1 | 1 | SIAVL |
| SIAVR | 1 | 1 | SIAVR |
| SIBDL | 1 | 1 | SIBDL |
| SIBDR | 1 | 1 | SIBDR |
| SIBVL | 1 | 1 | SIBVL |
| SIBVR | 1 | 1 | SIBVR |
| SMBDL | 1 | 0 | SMBDL |
| SMBDR | 1 | 0 | SMBDR |
| SMBVL | 1 | 0 | SMBVL |
| SMBVR | 1 | 0 | SMBVR |
| SMDDL | 1 | 1 | SMDDL |
| SMDDR | 1 | 1 | SMDDR |
| SMDVL | 1 | 1 | SMDVL |
| SMDVR | 1 | 1 | SMDVR |
| URADL | 1 | 0 | URADL |
| URADR | 1 | 0 | URADR |
| URAVL | 1 | 0 | URAVL |
| URAVR | 1 | 0 | URAVR |
| VA1 | 1 | 1 | VA1 |
| VA10 | 1 | 1 | VA10 |
| VA11 | 1 | 1 | VA11 |
| VA12 | 1 | 1 | VA12 |
| VA2 | 1 | 1 | VA2 |
| VA3 | 1 | 1 | VA3 |
| VA4 | 1 | 1 | VA4 |
| VA5 | 1 | 1 | VA5 |
| VA6 | 1 | 1 | VA6 |
| VA7 | 1 | 1 | VA7 |
| VA8 | 1 | 1 | VA8 |
| VA9 | 1 | 1 | VA9 |
| VB1 | 1 | 1 | VB1 |
| VB10 | 1 | 1 | VB10 |
| VB11 | 1 | 1 | VB11 |
| VB2 | 1 | 1 | VB2 |
| VB3 | 1 | 1 | VB3 |
| VB4 | 1 | 1 | VB4 |
| VB5 | 1 | 1 | VB5 |
| VB6 | 1 | 1 | VB6 |
| VB7 | 1 | 1 | VB7 |
| VB8 | 1 | 1 | VB8 |
| VB9 | 1 | 1 | VB9 |
| VC1 | 1 | 0 | VC1 |
| VC2 | 1 | 0 | VC2 |
| VC3 | 1 | 0 | VC3 |
| VC4 | 1 | 0 | VC4 |
| VC5 | 1 | 0 | VC5 |
| VC6 | 1 | 0 | VC6 |
| VD1 | 1 | 1 | VD1 |
| VD10 | 1 | 1 | VD10 |
| VD11 | 1 | 1 | VD11 |
| VD12 | 1 | 1 | VD12 |
| VD13 | 1 | 1 | VD13 |
| VD2 | 1 | 1 | VD2 |
| VD3 | 1 | 1 | VD3 |
| VD4 | 1 | 1 | VD4 |
| VD5 | 1 | 1 | VD5 |
| VD6 | 1 | 1 | VD6 |
| VD7 | 1 | 1 | VD7 |
| VD8 | 1 | 1 | VD8 |
| VD9 | 1 | 1 | VD9 |
Weight definition: Adjacency matrices are binary and directed; a weight of 1 between neurons A and B signifies that cell A expresses a biosynthetic enzyme or transporter for the specific monoamine and neuron B expresses a cognate receptor for that monoamine.
Validation tests: See here