Dataset: Bentley et al. 2016 (peptid.)
Data on peptidergic connectivity from Bentley et al. 2016 (i.e. extrasynaptic transmission via neuropeptides).
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WhiteJSH WhiteN2U White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Yim2024Contactome Yim2024ContactomeNonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Dataset taken from Bentley et al. 2016. Data extracted from edgelist_NP.csv for peptidergic connectivity of Bentley et al. 2016. Python Reader: Bentley2016PepReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons (head & sub lat.) - Motor Neurons and muscles - Interneurons (somatic) -
All head and sublateral hermaphrodite motor neurons
Motor Neurons (head & sub lat.) (MotorHeadSubLat)
All head and sublateral hermaphrodite motor neurons
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Extrasynaptic | (37, 37) matrix | 60 non-zero entries 4 nodes with self-connections Avg. weight: 1.000000 Sum of weights: 60.0 |
RMED, RMEL, RMER, RMEV, SIADL, SIADR, SIAVL, SIAVR, URADL, URADR, URAVL, URAVR | RIVL, RIVR, RMED, RMEL, RMER, RMEV, SABD, SABVL, SABVR, SMBDL, SMBDR |
| Nodes in current view (37 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (37 total) |
Num in this dataset (19 total) |
Cells in node |
|---|---|---|---|
| RIVL | 1 | 1 | RIVL |
| RIVR | 1 | 1 | RIVR |
| RMDDL | 1 | 0 | RMDDL |
| RMDDR | 1 | 0 | RMDDR |
| RMDL | 1 | 0 | RMDL |
| RMDR | 1 | 0 | RMDR |
| RMDVL | 1 | 0 | RMDVL |
| RMDVR | 1 | 0 | RMDVR |
| RMED | 1 | 1 | RMED |
| RMEL | 1 | 1 | RMEL |
| RMER | 1 | 1 | RMER |
| RMEV | 1 | 1 | RMEV |
| RMHL | 1 | 0 | RMHL |
| RMHR | 1 | 0 | RMHR |
| SABD | 1 | 1 | SABD |
| SABVL | 1 | 1 | SABVL |
| SABVR | 1 | 1 | SABVR |
| SIADL | 1 | 1 | SIADL |
| SIADR | 1 | 1 | SIADR |
| SIAVL | 1 | 1 | SIAVL |
| SIAVR | 1 | 1 | SIAVR |
| SIBDL | 1 | 0 | SIBDL |
| SIBDR | 1 | 0 | SIBDR |
| SIBVL | 1 | 0 | SIBVL |
| SIBVR | 1 | 0 | SIBVR |
| SMBDL | 1 | 1 | SMBDL |
| SMBDR | 1 | 1 | SMBDR |
| SMBVL | 1 | 0 | SMBVL |
| SMBVR | 1 | 0 | SMBVR |
| SMDDL | 1 | 0 | SMDDL |
| SMDDR | 1 | 0 | SMDDR |
| SMDVL | 1 | 0 | SMDVL |
| SMDVR | 1 | 0 | SMDVR |
| URADL | 1 | 1 | URADL |
| URADR | 1 | 1 | URADR |
| URAVL | 1 | 1 | URAVL |
| URAVR | 1 | 1 | URAVR |
Weight definition: Adjacency matrices are binary and directed; a weight of 1 between neurons signifies that a ligand-receptor pair with a biologically plausible EC50 is co-expressed across the two neurons.
Validation tests: See here