Dataset: Yim et al. 2024
Reconstruction of the chemical connectome of the dauer, a distinct developmental stage of C. elegans, with the weights normalized to ease comparison to other datasets.
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from Yim et al. 2024. Data extracted from 41467_2024_45943_MOESM6_ESM.xlsx Yim et al. 2024 on Dauer connectome (Normalized). Python Reader: Yim2024DataReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Subset of cells involved in locomotion
Locomotion 1 (Loco1)
Subset of cells involved in locomotion
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (8, 8) matrix | 1 non-zero entries Avg. weight: 0.160740 Sum of weights: 0.160739504056552 |
AVB | AVA |
| Nodes in current view (8 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (71 total) |
Num in this dataset (4 total) |
Cells in node |
|---|---|---|---|
| AVA | 2 | 2 | AVAL, AVAR |
| AVB | 2 | 2 | AVBL, AVBR |
| DA | 10 | 0 | DA1, DA10, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9 |
| DB | 10 | 0 | DB1, DB10, DB2, DB3, DB4, DB5, DB6, DB7, DB8, DB9 |
| DD | 10 | 0 | DD1, DD10, DD2, DD3, DD4, DD5, DD6, DD7, DD8, DD9 |
| VA | 12 | 0 | VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9 |
| VB | 12 | 0 | VB1, VB10, VB11, VB12, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9 |
| VD | 13 | 0 | VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |
Weight definition: Weights represent the contact area between pairs of cells, normalized by the standard deviation of connection weights without the top 5th percentile to remove the bias due to the big outliers
Validation tests: See here