Dataset: White et al. 1986 (whole worm)
Reanalysis of the White et al. 1986 connectome data by Varshney et al. 2011, but including the pharynx.
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from White et al. 1986. Data extracted from aconnectome_white_1986_whole.csv - all connectivity from White et al. 1986). Python Reader: White_whole
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Subset of cells involved in locomotion
Symmetry graph of that view, Loco1, is not possible, as it contains nodes with multiple cells
Symmetry graph of that view, Loco1, is not possible, as it contains nodes with multiple cells
Locomotion 1 (Loco1)
Subset of cells involved in locomotion
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (8, 8) matrix | 37 non-zero entries 5 nodes with self-connections Avg. weight: 30.594595 Sum of weights: 1132.0 |
AVA, AVB, DA, DB, DD, VA, VB, VD | AVA, AVB, DA, DB, DD, VA, VB, VD |
| Electrical | (8, 8) matrix | 40 non-zero entries 8 nodes with self-connections Matrix is symmetric with 24 unique pairs (total unique pair weight: 328.0) Avg. weight: 13.625000 Sum of weights: 545.0 |
AVA, AVB, DA, DB, DD, VA, VB, VD | AVA, AVB, DA, DB, DD, VA, VB, VD |
| Nodes in current view (8 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (71 total) |
Num in this dataset (62 total) |
Cells in node |
|---|---|---|---|
| AVA | 2 | 2 | AVAL, AVAR |
| AVB | 2 | 2 | AVBL, AVBR |
| DA | 10 | 9 | DA1, DA10, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9 |
| DB | 10 | 7 | DB1, DB10, DB2, DB3, DB4, DB5, DB6, DB7, DB8, DB9 |
| DD | 10 | 6 | DD1, DD10, DD2, DD3, DD4, DD5, DD6, DD7, DD8, DD9 |
| VA | 12 | 12 | VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9 |
| VB | 12 | 11 | VB1, VB10, VB11, VB12, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9 |
| VD | 13 | 13 | VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |
Validation tests: See here