Dataset: White et al. 1986 JSH/L4
Chemical and electrical connectivity of the JSH L4 worm from White et al. 1986 data, based on the neurodata.txt file from R. M. Durbin's thesis, 1987. See validation information for minor changes from that file.
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WhiteJSH WhiteN2U White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Yim2024Contactome Yim2024ContactomeNonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Dataset taken from White et al. 1986. Data extracted from neurodata_updated.txt for neuronal connectivity of JSH L4 from Durbin thesis. Python Reader: DurbinJSHDataReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons (head & sub lat.) - Motor Neurons and muscles - Interneurons (somatic) -
Subset of cells involved in locomotion
Symmetry graph of that view, Loco1, is not possible, as it contains nodes with multiple cells
Locomotion 1 (Loco1)
Subset of cells involved in locomotion
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Electrical | (8, 8) matrix | 6 non-zero entries 2 nodes with self-connections Matrix is symmetric with 4 unique pairs (total unique pair weight: 24.0) Avg. weight: 4.666667 Sum of weights: 28.0 |
AVA, AVB, DB, VA | AVA, AVB, DB, VA |
| Nodes in current view (8 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (72 total) |
Num in this dataset (8 total) |
Cells in node |
|---|---|---|---|
| AVA | 2 | 2 | AVAL, AVAR |
| AVB | 2 | 2 | AVBL, AVBR |
| DA | 12 | 0 | DA1, DA10, DA11, DA12, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9 |
| DB | 10 | 1 | DB1, DB10, DB2, DB3, DB4, DB5, DB6, DB7, DB8, DB9 |
| DD | 9 | 0 | DD1, DD2, DD3, DD4, DD5, DD6, DD7, DD8, DD9 |
| VA | 12 | 1 | VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9 |
| VB | 12 | 1 | VB1, VB10, VB11, VB12, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9 |
| VD | 13 | 1 | VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |
Validation tests: See here