Dataset: WormNeuroAtlas
Data from the WormNeuroAtlas package for neuronal connectivity. NOTE: only for testing, not validated against a specific published dataset.
Choose Dataset
WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from Randi et al. 2023. Data from the WormNeuroAtlas package for neuronal connectivity. NOTE: only for testing, not validated against a specific published dataset.. Python Reader: WormNeuroAtlasReader
Choose View
Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
All hermaphrodite interneurons except those in the pharynx
Interneurons (somatic) (InterneuronsSomaticH)
All hermaphrodite interneurons except those in the pharynx
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (81, 81) matrix | 727 non-zero entries 3 nodes with self-connections Avg. weight: 5.653370 Sum of weights: 4110.0 |
ADAL, ADAR, AIAL, AIAR, AIBL, AIBR, AIML, AIMR, AINL, AINR, AIYL, AIYR, AIZL, AIZR, ALA, AUAL, AUAR, AVFL, AVFR, AVHL, AVHR, AVJL, AVJR, AVKL, AVKR, AVL, BDUL, BDUR, DVC, PVCL, PVCR, PVNL, PVNR, PVPL, PVPR, PVQL, PVQR, PVR, PVT, RIAL, RIAR, RIBL, RIBR, RICL, RICR, RIFL, RIFR, RIGL, RIGR, RIH, RIML, RIMR, RIR, RIS, RMFL, RMFR, RMGL, RMGR, SAADL, SAADR, SAAVL, SAAVR, URBL, URBR | ADAL, ADAR, AIAL, AIAR, AIBL, AIBR, AIML, AIMR, AINL, AINR, AIYL, AIYR, AIZL, AIZR, ALA, AUAL, AUAR, AVAL, AVAR, AVBL, AVBR, AVDL, AVDR, AVEL, AVER, AVFL, AVFR, AVHL, AVHR, AVJL, AVJR, AVKL, AVKR, AVL, BDUL, BDUR, DVC, PVCL, PVCR, PVNL, PVNR, PVPL, PVPR, PVQL, PVQR, PVT, RIAL, RIAR, RIBL, RIBR, RICL, RICR, RID, RIFL, RIFR, RIGL, RIGR, RIH, RIML, RIMR, RIPL, RIPR, RIR, RIS, RMFL, RMFR, RMGL, RMGR, SAADL, SAADR, SAAVL, SAAVR, URBL |
| Electrical | (81, 81) matrix | 214 non-zero entries 8 nodes with self-connections Matrix is symmetric with 111 unique pairs (total unique pair weight: 226.0) Avg. weight: 2.065421 Sum of weights: 442.0 |
ADAL, ADAR, AIAL, AIAR, AIBL, AIBR, AIML, AIMR, AINL, AINR, AIYL, AIYR, AIZL, AIZR, ALA, AUAL, AUAR, AVAL, AVAR, AVBL, AVBR, AVDL, AVDR, AVEL, AVER, AVJL, AVJR, AVKL, AVKR, BDUL, BDUR, DVC, PVCL, PVCR, PVNR, PVPL, PVPR, PVQL, PVQR, PVT, RIAL, RIAR, RIBL, RIBR, RICL, RICR, RID, RIGL, RIGR, RIML, RIMR, RIPL, RIPR, RIR, RIS, RMFL, RMFR, RMGL, RMGR, SAADR, SAAVL | ADAL, ADAR, AIAL, AIAR, AIBL, AIBR, AIML, AIMR, AINL, AINR, AIYL, AIYR, AIZL, AIZR, ALA, AUAL, AUAR, AVAL, AVAR, AVBL, AVBR, AVDL, AVDR, AVEL, AVER, AVJL, AVJR, AVKL, AVKR, BDUL, BDUR, DVC, PVCL, PVCR, PVNR, PVPL, PVPR, PVQL, PVQR, PVT, RIAL, RIAR, RIBL, RIBR, RICL, RICR, RID, RIGL, RIGR, RIML, RIMR, RIPL, RIPR, RIR, RIS, RMFL, RMFR, RMGL, RMGR, SAADR, SAAVL |
| Acetylcholine | (81, 81) matrix | 247 non-zero entries 1 nodes with self-connections Avg. weight: 5.481781 Sum of weights: 1354.0 |
AIAL, AIAR, AINL, AINR, AIYL, AIYR, PVCL, PVCR, PVNL, PVNR, PVPL, PVPR, RIFL, RIFR, RIH, RIR, RMFL, RMFR, SAADL, SAADR, SAAVL, SAAVR, URBL, URBR | ADAL, ADAR, AIAL, AIAR, AIBL, AIBR, AIMR, AINR, AIYL, AIYR, AIZL, AIZR, AUAL, AUAR, AVAL, AVAR, AVBL, AVBR, AVDL, AVDR, AVEL, AVER, AVFL, AVFR, AVHL, AVHR, AVJL, AVJR, AVKL, AVKR, BDUL, BDUR, DVC, PVCL, PVCR, PVNL, PVNR, PVPL, PVPR, PVQR, PVT, RIAL, RIAR, RIBL, RIBR, RICL, RICR, RID, RIFL, RIFR, RIGL, RIGR, RIML, RIMR, RIPL, RIPR, RIR, RIS, RMFL, RMFR, RMGL, RMGR, SAADL, SAAVR, URBL |
| GABA | (81, 81) matrix | 96 non-zero entries Avg. weight: 4.114583 Sum of weights: 395.0 |
ALA, AVFL, AVFR, AVJL, AVJR, AVL, RIBL, RIBR, RIS | ADAL, ADAR, AIAL, AIBL, AIBR, AIMR, AIYL, AIZL, AUAL, AUAR, AVAL, AVAR, AVBL, AVBR, AVDL, AVDR, AVEL, AVER, AVFL, AVFR, AVHR, AVJL, AVKL, AVKR, AVL, BDUL, BDUR, PVCL, PVCR, PVNL, PVNR, PVPL, PVQL, PVQR, PVT, RIAL, RIAR, RIBL, RIBR, RICL, RICR, RID, RIFL, RIFR, RIGL, RIGR, RIH, RIML, RIMR, RIS, RMFL, RMFR |
| Glutamate | (81, 81) matrix | 247 non-zero entries 1 nodes with self-connections Avg. weight: 7.485830 Sum of weights: 1849.0 |
ADAL, ADAR, AIBL, AIBR, AIML, AIMR, AIZL, AIZR, AUAL, AUAR, DVC, PVQL, PVQR, PVR, RIAL, RIAR, RIGL, RIGR, RIML, RIMR | ADAL, ADAR, AIAL, AIAR, AIBL, AIBR, AIML, AIMR, AINL, AINR, AIYL, AIYR, AIZL, AIZR, ALA, AUAL, AUAR, AVAL, AVAR, AVBL, AVBR, AVDL, AVDR, AVEL, AVER, AVFL, AVFR, AVJL, AVJR, AVKL, AVKR, AVL, DVC, PVCL, PVNL, PVPR, PVQL, PVT, RIAL, RIAR, RIBL, RIBR, RICL, RICR, RID, RIFL, RIFR, RIGL, RIGR, RIH, RIML, RIMR, RIPL, RIPR, RIR, RIS, RMFL, RMFR, RMGL, RMGR, SAADL, SAADR, SAAVL, SAAVR |
| OtherChemicalNT | (81, 81) matrix | 137 non-zero entries 1 nodes with self-connections Avg. weight: 3.737226 Sum of weights: 512.0 |
AVHL, AVHR, AVKL, AVKR, BDUL, BDUR, PVT, RICL, RICR, RMGL, RMGR | ADAL, ADAR, AIAR, AIBL, AIBR, AIML, AIMR, AINR, AVAL, AVAR, AVBL, AVBR, AVDL, AVDR, AVEL, AVER, AVFL, AVFR, AVHL, AVJL, AVJR, AVKL, AVKR, AVL, BDUL, DVC, PVCL, PVCR, PVNL, PVNR, PVPL, PVPR, PVQL, RIAL, RIAR, RICL, RICR, RID, RIFL, RIFR, RIGL, RIGR, RIH, RIML, RIMR, RIR, RIS, RMFL, RMFR, RMGL, SAADL, SAADR, SAAVL, SAAVR, URBL |
| Nodes in current view (81 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (81 total) |
Num in this dataset (75 total) |
Cells in node |
|---|---|---|---|
| ADAL | 1 | 1 | ADAL |
| ADAR | 1 | 1 | ADAR |
| AIAL | 1 | 1 | AIAL |
| AIAR | 1 | 1 | AIAR |
| AIBL | 1 | 1 | AIBL |
| AIBR | 1 | 1 | AIBR |
| AIML | 1 | 1 | AIML |
| AIMR | 1 | 1 | AIMR |
| AINL | 1 | 1 | AINL |
| AINR | 1 | 1 | AINR |
| AIYL | 1 | 1 | AIYL |
| AIYR | 1 | 1 | AIYR |
| AIZL | 1 | 1 | AIZL |
| AIZR | 1 | 1 | AIZR |
| ALA | 1 | 1 | ALA |
| AUAL | 1 | 1 | AUAL |
| AUAR | 1 | 1 | AUAR |
| AVAL | 1 | 1 | AVAL |
| AVAR | 1 | 1 | AVAR |
| AVBL | 1 | 1 | AVBL |
| AVBR | 1 | 1 | AVBR |
| AVDL | 1 | 1 | AVDL |
| AVDR | 1 | 1 | AVDR |
| AVEL | 1 | 1 | AVEL |
| AVER | 1 | 1 | AVER |
| AVFL | 1 | 1 | AVFL |
| AVFR | 1 | 1 | AVFR |
| AVG | 1 | 0 | AVG |
| AVHL | 1 | 1 | AVHL |
| AVHR | 1 | 1 | AVHR |
| AVJL | 1 | 1 | AVJL |
| AVJR | 1 | 1 | AVJR |
| AVKL | 1 | 1 | AVKL |
| AVKR | 1 | 1 | AVKR |
| AVL | 1 | 1 | AVL |
| BDUL | 1 | 1 | BDUL |
| BDUR | 1 | 1 | BDUR |
| DVB | 1 | 0 | DVB |
| DVC | 1 | 1 | DVC |
| LUAL | 1 | 0 | LUAL |
| LUAR | 1 | 0 | LUAR |
| PVCL | 1 | 1 | PVCL |
| PVCR | 1 | 1 | PVCR |
| PVNL | 1 | 1 | PVNL |
| PVNR | 1 | 1 | PVNR |
| PVPL | 1 | 1 | PVPL |
| PVPR | 1 | 1 | PVPR |
| PVQL | 1 | 1 | PVQL |
| PVQR | 1 | 1 | PVQR |
| PVR | 1 | 1 | PVR |
| PVT | 1 | 1 | PVT |
| PVWL | 1 | 0 | PVWL |
| PVWR | 1 | 0 | PVWR |
| RIAL | 1 | 1 | RIAL |
| RIAR | 1 | 1 | RIAR |
| RIBL | 1 | 1 | RIBL |
| RIBR | 1 | 1 | RIBR |
| RICL | 1 | 1 | RICL |
| RICR | 1 | 1 | RICR |
| RID | 1 | 1 | RID |
| RIFL | 1 | 1 | RIFL |
| RIFR | 1 | 1 | RIFR |
| RIGL | 1 | 1 | RIGL |
| RIGR | 1 | 1 | RIGR |
| RIH | 1 | 1 | RIH |
| RIML | 1 | 1 | RIML |
| RIMR | 1 | 1 | RIMR |
| RIPL | 1 | 1 | RIPL |
| RIPR | 1 | 1 | RIPR |
| RIR | 1 | 1 | RIR |
| RIS | 1 | 1 | RIS |
| RMFL | 1 | 1 | RMFL |
| RMFR | 1 | 1 | RMFR |
| RMGL | 1 | 1 | RMGL |
| RMGR | 1 | 1 | RMGR |
| SAADL | 1 | 1 | SAADL |
| SAADR | 1 | 1 | SAADR |
| SAAVL | 1 | 1 | SAAVL |
| SAAVR | 1 | 1 | SAAVR |
| URBL | 1 | 1 | URBL |
| URBR | 1 | 1 | URBR |
Validation tests: See here