Dataset: Brittin et al. 2021
Membrane contact information from Brittin et al. 2021. This dataset contains information on the contact area between pairs of cells in the C. elegans nerve ring, as measured by electron microscopy. The M4 graph as described in the paper is used here.
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from Brittin et al. 2021. Data extracted from 41586_2021_3284_MOESM5_ESM.xlsx for membrane contact information.. Python Reader: BrittinDataReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
All hermaphrodite interneurons except those in the pharynx
Interneurons (somatic) (InterneuronsSomaticH)
All hermaphrodite interneurons except those in the pharynx
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Contact | (81, 81) matrix | 1038 non-zero entries Matrix is symmetric with 519 unique pairs (total unique pair weight: 6588280.0) Avg. weight: 12694.181118 Sum of weights: 13176560.0 |
ADAL, ADAR, AIAL, AIAR, AIBL, AIBR, AIML, AIMR, AINL, AINR, AIYL, AIYR, AIZL, AIZR, ALA, AUAL, AUAR, AVAL, AVAR, AVBL, AVBR, AVDL, AVDR, AVEL, AVER, AVFL, AVFR, AVHL, AVHR, AVJL, AVJR, AVKL, AVKR, AVL, BDUL, BDUR, DVC, PVCL, PVCR, PVPL, PVPR, PVQL, PVQR, PVT, RIAL, RIAR, RIBL, RIBR, RICL, RICR, RID, RIFL, RIFR, RIGL, RIGR, RIH, RIML, RIMR, RIPL, RIPR, RIR, RIS, RMFL, RMFR, RMGL, RMGR, SAADL, SAADR, SAAVL, SAAVR, URBL, URBR | ADAL, ADAR, AIAL, AIAR, AIBL, AIBR, AIML, AIMR, AINL, AINR, AIYL, AIYR, AIZL, AIZR, ALA, AUAL, AUAR, AVAL, AVAR, AVBL, AVBR, AVDL, AVDR, AVEL, AVER, AVFL, AVFR, AVHL, AVHR, AVJL, AVJR, AVKL, AVKR, AVL, BDUL, BDUR, DVC, PVCL, PVCR, PVPL, PVPR, PVQL, PVQR, PVT, RIAL, RIAR, RIBL, RIBR, RICL, RICR, RID, RIFL, RIFR, RIGL, RIGR, RIH, RIML, RIMR, RIPL, RIPR, RIR, RIS, RMFL, RMFR, RMGL, RMGR, SAADL, SAADR, SAAVL, SAAVR, URBL, URBR |
| Nodes in current view (81 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (81 total) |
Num in this dataset (72 total) |
Cells in node |
|---|---|---|---|
| ADAL | 1 | 1 | ADAL |
| ADAR | 1 | 1 | ADAR |
| AIAL | 1 | 1 | AIAL |
| AIAR | 1 | 1 | AIAR |
| AIBL | 1 | 1 | AIBL |
| AIBR | 1 | 1 | AIBR |
| AIML | 1 | 1 | AIML |
| AIMR | 1 | 1 | AIMR |
| AINL | 1 | 1 | AINL |
| AINR | 1 | 1 | AINR |
| AIYL | 1 | 1 | AIYL |
| AIYR | 1 | 1 | AIYR |
| AIZL | 1 | 1 | AIZL |
| AIZR | 1 | 1 | AIZR |
| ALA | 1 | 1 | ALA |
| AUAL | 1 | 1 | AUAL |
| AUAR | 1 | 1 | AUAR |
| AVAL | 1 | 1 | AVAL |
| AVAR | 1 | 1 | AVAR |
| AVBL | 1 | 1 | AVBL |
| AVBR | 1 | 1 | AVBR |
| AVDL | 1 | 1 | AVDL |
| AVDR | 1 | 1 | AVDR |
| AVEL | 1 | 1 | AVEL |
| AVER | 1 | 1 | AVER |
| AVFL | 1 | 1 | AVFL |
| AVFR | 1 | 1 | AVFR |
| AVG | 1 | 0 | AVG |
| AVHL | 1 | 1 | AVHL |
| AVHR | 1 | 1 | AVHR |
| AVJL | 1 | 1 | AVJL |
| AVJR | 1 | 1 | AVJR |
| AVKL | 1 | 1 | AVKL |
| AVKR | 1 | 1 | AVKR |
| AVL | 1 | 1 | AVL |
| BDUL | 1 | 1 | BDUL |
| BDUR | 1 | 1 | BDUR |
| DVB | 1 | 0 | DVB |
| DVC | 1 | 1 | DVC |
| LUAL | 1 | 0 | LUAL |
| LUAR | 1 | 0 | LUAR |
| PVCL | 1 | 1 | PVCL |
| PVCR | 1 | 1 | PVCR |
| PVNL | 1 | 0 | PVNL |
| PVNR | 1 | 0 | PVNR |
| PVPL | 1 | 1 | PVPL |
| PVPR | 1 | 1 | PVPR |
| PVQL | 1 | 1 | PVQL |
| PVQR | 1 | 1 | PVQR |
| PVR | 1 | 0 | PVR |
| PVT | 1 | 1 | PVT |
| PVWL | 1 | 0 | PVWL |
| PVWR | 1 | 0 | PVWR |
| RIAL | 1 | 1 | RIAL |
| RIAR | 1 | 1 | RIAR |
| RIBL | 1 | 1 | RIBL |
| RIBR | 1 | 1 | RIBR |
| RICL | 1 | 1 | RICL |
| RICR | 1 | 1 | RICR |
| RID | 1 | 1 | RID |
| RIFL | 1 | 1 | RIFL |
| RIFR | 1 | 1 | RIFR |
| RIGL | 1 | 1 | RIGL |
| RIGR | 1 | 1 | RIGR |
| RIH | 1 | 1 | RIH |
| RIML | 1 | 1 | RIML |
| RIMR | 1 | 1 | RIMR |
| RIPL | 1 | 1 | RIPL |
| RIPR | 1 | 1 | RIPR |
| RIR | 1 | 1 | RIR |
| RIS | 1 | 1 | RIS |
| RMFL | 1 | 1 | RMFL |
| RMFR | 1 | 1 | RMFR |
| RMGL | 1 | 1 | RMGL |
| RMGR | 1 | 1 | RMGR |
| SAADL | 1 | 1 | SAADL |
| SAADR | 1 | 1 | SAADR |
| SAAVL | 1 | 1 | SAAVL |
| SAAVR | 1 | 1 | SAAVR |
| URBL | 1 | 1 | URBL |
| URBR | 1 | 1 | URBR |
Weight definition: Weights represent the contact area between pairs of cells
Validation tests: See here