Dataset: Wang et al. 2024 (herm.)
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White_A White_L4 White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Dataset taken from Wang et al. 2024. A reader combining neurotransmitter atlas values from Wang et al. 2024 (source: elife-95402-supp2-v1.xlsx) with basic anatomical connectivity information from Cook et al. 2019 Hermaphrodite connectome, and monoaminergic receptor expression information from Bentley et al. 2015. Python Reader: Wang2024HermReader
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Raw Data Neurons Pharynx Social Network Escape Response Circuit Cook 2019 Fig 3 BrainMap A BrainMap B Locomotion 1 Locomotion 2 Locomotion 3 Peptidergic Hubs Nonpharyngeal Neurons (herm) Sensory Neurons (somatic) Motor Neurons (somatic) Motor Neurons and muscles Interneurons (somatic)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
Cook 2019 Fig 3 (Full1)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (17, 17) matrix | 182 non-zero entries 15 nodes with self-connections Avg. weight: 23.928571 Sum of weights: 4355.0 |
HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Extrasynaptic | (17, 17) matrix | 63 non-zero entries 5 nodes with self-connections Avg. weight: 26.158730 Sum of weights: 1648.0 |
HSN, IN1, IN2, SN1, SN3, SN6 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6 |
| Acetylcholine | (17, 17) matrix | 152 non-zero entries 13 nodes with self-connections Avg. weight: 16.723684 Sum of weights: 2542.0 |
HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN3, SN4, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| GABA | (17, 17) matrix | 49 non-zero entries 5 nodes with self-connections Avg. weight: 10.020408 Sum of weights: 491.0 |
HMN, IN2, IN3, MNVC, SMN | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Glutamate | (17, 17) matrix | 112 non-zero entries 10 nodes with self-connections Avg. weight: 10.669643 Sum of weights: 1195.0 |
IN1, IN2, IN3, IN4, SN1, SN2, SN3, SN4, SN5, SN6 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Betaine | (17, 17) matrix | 29 non-zero entries 4 nodes with self-connections Avg. weight: 4.379310 Sum of weights: 127.0 |
IN1, IN3, IN4, SN6 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUHEAD, SMN, SN1, SN3, SN4, SN5, SN6 |
| Dopamine | (17, 17) matrix | 24 non-zero entries 2 nodes with self-connections Avg. weight: 46.333333 Sum of weights: 1112.0 |
SN1, SN3 | HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN6 |
| Serotonin | (17, 17) matrix | 18 non-zero entries 1 nodes with self-connections Avg. weight: 14.666667 Sum of weights: 264.0 |
HSN, SN6 | HMN, IN1, IN2, IN3, MNVC, SN1, SN3, SN5, SN6 |
| Tyramine | (17, 17) matrix | 13 non-zero entries 1 nodes with self-connections Avg. weight: 16.615385 Sum of weights: 216.0 |
IN1 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN3, SN4, SN5, SN6 |
| Octopamine | (17, 17) matrix | 8 non-zero entries 1 nodes with self-connections Avg. weight: 7.000000 Sum of weights: 56.0 |
IN2 | IN2, IN3, SMN, SN1, SN2, SN3, SN5, SN6 |