Dataset: SSData
Choose Dataset
White_A White_L4 White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Data extracted from CElegansNeuronTables.xls for neuronal connectivity. Note: legacy dataset (based on White_whole) used in the past in OpenWorm. Only included here for reference! Do not use!. Python Reader: SpreadsheetDataReader
Choose View
Raw Data Neurons Pharynx Social Network Escape Response Circuit Cook 2019 Fig 3 BrainMap A BrainMap B Locomotion 1 Locomotion 2 Locomotion 3 Peptidergic Hubs Nonpharyngeal Neurons (herm) Sensory Neurons (somatic) Motor Neurons (somatic) Motor Neurons and muscles Interneurons (somatic)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
Cook 2019 Fig 3 (Full1)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (17, 17) matrix | 147 non-zero entries 14 nodes with self-connections Avg. weight: 48.639456 Sum of weights: 7150.0 |
HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Electrical | (17, 17) matrix | 107 non-zero entries 15 nodes with self-connections Matrix is symmetric with 61 unique pairs Avg. weight: 16.570093 Sum of weights: 1773.0 |
HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Extrasynaptic | (17, 17) matrix | 53 non-zero entries 6 nodes with self-connections Avg. weight: 15.358491 Sum of weights: 814.0 |
IN2, IN4, MNVC, SN1, SN2, SN3, SN6 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6 |
| Acetylcholine | (17, 17) matrix | 59 non-zero entries 6 nodes with self-connections Avg. weight: 44.271186 Sum of weights: 2612.0 |
HMN, IN2, IN3, IN4, MNVC, SMN, SN1, SN4 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN3, SN4, SN5, SN6, VC |
| Acetylcholine_Tyramine | (17, 17) matrix | 6 non-zero entries 1 nodes with self-connections Avg. weight: 11.000000 Sum of weights: 66.0 |
IN1 | HMN, IN1, IN2, IN3, MUHEAD, SMN |
| FMRFamide | (17, 17) matrix | 30 non-zero entries 5 nodes with self-connections Avg. weight: 23.000000 Sum of weights: 690.0 |
IN1, IN2, MNVC, SN5, SN6 | HMN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN3, SN4, SN5, SN6 |
| GABA | (17, 17) matrix | 43 non-zero entries 6 nodes with self-connections Avg. weight: 25.627907 Sum of weights: 1102.0 |
HMN, IN1, IN2, IN3, MNVC, SN3 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4 |
| Glutamate | (17, 17) matrix | 92 non-zero entries 9 nodes with self-connections Avg. weight: 26.619565 Sum of weights: 2449.0 |
HMN, IN1, IN2, IN3, IN4, SN1, SN2, SN3, SN4, SN5, SN6 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Serotonin_Acetylcholine | (17, 17) matrix | 17 non-zero entries 2 nodes with self-connections Avg. weight: 13.470588 Sum of weights: 229.0 |
HSN, VC | HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN5, SN6, VC |
| OtherChemicalNT | (17, 17) matrix | 1 non-zero entries Avg. weight: 2.000000 Sum of weights: 2.0 |
SN1 | MUHEAD |
| Dopamine | (17, 17) matrix | 19 non-zero entries 2 nodes with self-connections Avg. weight: 17.105263 Sum of weights: 325.0 |
SN1, SN3 | HMN, IN1, IN2, IN3, IN4, MNVC, MUHEAD, SMN, SN1, SN3, SN5, SN6 |
| Serotonin | (17, 17) matrix | 37 non-zero entries 5 nodes with self-connections Avg. weight: 11.864865 Sum of weights: 439.0 |
IN2, IN4, MNVC, SN1, SN2, SN6 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, SMN, SN1, SN2, SN3, SN4, SN5, SN6 |
| Octopamine | (17, 17) matrix | 5 non-zero entries 1 nodes with self-connections Avg. weight: 10.000000 Sum of weights: 50.0 |
IN2 | HMN, IN1, IN2, IN3, SMN |