Dataset: Cook et al. 2019 (herm.)
Chemical and electrical connectivity of the hermaphrodite from Cook et al. 2019, including connections between neurons, muscles and other cells.
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from Cook et al. 2019. Data extracted from SI 5 Connectome adjacency matrices, corrected July 2020.xlsx for neuronal connectivity of hermaphrodite. Python Reader: Cook2019HermReader
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Raw Data Neurons Pharynx Social Network Escape Response Circuit Cook 2019 Fig 3 BrainMap A BrainMap B Locomotion 1 Locomotion 2 Locomotion 3 Peptidergic Hubs Nonpharyngeal Neurons (herm) Sensory Neurons (somatic) Motor Neurons (somatic) Motor Neurons and muscles Interneurons (somatic)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
Cook 2019 Fig 3 (Full1)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (17, 17) matrix | 185 non-zero entries 15 nodes with self-connections Avg. weight: 136.913514 Sum of weights: 25329.0 |
HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Electrical | (17, 17) matrix | 147 non-zero entries 17 nodes with self-connections Matrix is symmetric with 82 unique pairs (total unique pair weight: 9025.0) Avg. weight: 83.176871 Sum of weights: 12227.0 |
HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, MUBODY, MUHEAD, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
Validation tests: See here