Dataset: Yim et al. 2024 (dauer) Contactome
Reconstruction of the contactome of the dauer, a distinct developmental stage of C. elegans , contains a symmetric matrix measuring physical contact between pairs of cells. Every cell in the reconstructed EM volume was traced voxel by voxel; these labeled cells were then expanded until the extracellular gaps between them closed, and the area of each resulting point of contact summed. This connectome dataset contains normalized contact areas/weights to ease comparison to other datasets.
Contact View info
Escape Response Circuit (Escape)
Escape Response Circuit from Pirri & Alkema, 2013
Connection type
Total size
Values present
Nodes with pre connections
Nodes with post connections
Contact (15, 15) matrix82 non-zero entries8 nodes with self-connections15.720753 1289.101756959325 ALM AVA AVB AVD AVM Body Musc Head Musc PVC RIM RMD SMD ALM AVA AVB AVD AVM Body Musc Head Musc PVC RIM RMD SMD
Nodes in current viewxxxxxxxxxxxxxxxxxxxxxxxxx
Num cells in node
Num in this dataset
Cells in node
ALM 2
2
ALML ALMR
AVA 2
2
AVAL AVAR
AVB 2
2
AVBL AVBR
AVD 2
2
AVDL AVDR
AVM 1
1
AVM
Body Musc 68
3
BWM MDL08 MDL09 MDL10 MDL11 MDL12 MDL13 MDL14 MDL15 MDL16 MDL17 MDL18 MDL19 MDL20 MDL21 MDL22 MDL23 MDL24 MDR08 MDR09 MDR10 MDR11 MDR12 MDR13 MDR14 MDR15 MDR16 MDR17 MDR18 MDR19 MDR20 MDR21 MDR22 MDR23 MDR24 MVL08 MVL09 MVL10 MVL11 MVL12 MVL13 MVL14 MVL15 MVL16 MVL17 MVL18 MVL19 MVL20 MVL21 MVL22 MVL23 MVR08 MVR09 MVR10 MVR11 MVR12 MVR13 MVR14 MVR15 MVR16 MVR17 MVR18 MVR19 MVR20 MVR21 MVR22 MVR23 MVR24
Head Musc 28
28
MDL01 MDL02 MDL03 MDL04 MDL05 MDL06 MDL07 MDR01 MDR02 MDR03 MDR04 MDR05 MDR06 MDR07 MVL01 MVL02 MVL03 MVL04 MVL05 MVL06 MVL07 MVR01 MVR02 MVR03 MVR04 MVR05 MVR06 MVR07
PLM 2
0
PLML PLMR
PVC 2
2
PVCL PVCR
PVM 1
0
PVM
RIM 2
2
RIML RIMR
RMD 6
6
RMDDL RMDDR RMDL RMDR RMDVL RMDVR
SMD 4
4
SMDDL SMDDR SMDVL SMDVR
VA/DA 21
0
DA1 DA2 DA3 DA4 DA5 DA6 DA7 DA8 DA9 VA1 VA10 VA11 VA12 VA2 VA3 VA4 VA5 VA6 VA7 VA8 VA9
VB/DB 18
0
DB1 DB2 DB3 DB4 DB5 DB6 DB7 VB1 VB10 VB11 VB2 VB3 VB4 VB5 VB6 VB7 VB8 VB9
Weight definition: Weights are calculated from the total contact area between a pair of cells. In this dataset, these are normalized by the standard deviation of connection weights excluding the top 5% of weights, to remove the bias due to the big outliers.
Validation tests: See here
Neurons (herm) (179)
Full list of Neurons (hermaphrodite only) in this dataset
ADAL ADAR ADEL ADER ADFL ADFR ADLL ADLR AFDL AFDR AIAL AIAR AIBL AIBR AIML AIMR AINL AINR AIYL AIYR AIZL AIZR ALA ALML ALMR ALNL ALNR AQR ASEL ASER ASGL ASGR ASHL ASHR ASIL ASIR ASJL ASJR ASKL ASKR AUAL AUAR AVAL AVAR AVBL AVBR AVDL AVDR AVEL AVER AVFL AVFR AVHL AVHR AVJL AVJR AVKL AVKR AVL AVM AWAL AWAR AWBL AWBR AWCL AWCR BAGL BAGR BDUL BDUR CEPDL CEPDR CEPVL CEPVR DVA DVC FLPL FLPR HSNR IL1DL IL1DR IL1L IL1R IL1VL IL1VR IL2DL IL2DR IL2L IL2R IL2VL IL2VR OLLL OLLR OLQDL OLQDR OLQVL OLQVR PLNL PLNR PVCL PVCR PVNL PVNR PVPL PVPR PVQL PVQR PVR PVT RIAL RIAR RIBL RIBR RICL RICR RID RIFL RIFR RIGL RIGR RIH RIML RIMR RIPL RIPR RIR RIS RIVL RIVR RMDDL RMDDR RMDL RMDR RMDVL RMDVR RMED RMEL RMER RMEV RMFL RMFR RMGL RMGR RMHL RMHR SAADL SAADR SAAVL SAAVR SDQL SDQR SIADL SIADR SIAVL SIAVR SIBDL SIBDR SIBVL SIBVR SMBDL SMBDR SMBVL SMBVR SMDDL SMDDR SMDVL SMDVR URADL URADR URAVL URAVR URBL URBR URXL URXR URYDL URYDR URYVL URYVR Missing neurons (123)
Full list of Missing neurons (known hermaphrodite neurons not present)
AS1 AS10 AS11 AS2 AS3 AS4 AS5 AS6 AS7 AS8 AS9 AVG CANL CANR DA1 DA2 DA3 DA4 DA5 DA6 DA7 DA8 DA9 DB1 DB2 DB3 DB4 DB5 DB6 DB7 DD1 DD2 DD3 DD4 DD5 DD6 DVB HSNL I1L I1R I2L I2R I3 I4 I5 I6 LUAL LUAR M1 M2L M2R M3L M3R M4 M5 MCL MCR MI NSML NSMR PDA PDB PDEL PDER PHAL PHAR PHBL PHBR PHCL PHCR PLML PLMR PQR PVDL PVDR PVM PVWL PVWR SABD SABVL SABVR VA1 VA10 VA11 VA12 VA2 VA3 VA4 VA5 VA6 VA7 VA8 VA9 VB1 VB10 VB11 VB2 VB3 VB4 VB5 VB6 VB7 VB8 VB9 VC1 VC2 VC3 VC4 VC5 VC6 VD1 VD10 VD11 VD12 VD13 VD2 VD3 VD4 VD5 VD6 VD7 VD8 VD9 Muscles (31)
Full list of Muscles in this dataset
MDL01 MDL02 MDL03 MDL04 MDL05 MDL06 MDL07 MDL08 MDR01 MDR02 MDR03 MDR04 MDR05 MDR06 MDR07 MDR08 MVL01 MVL02 MVL03 MVL04 MVL05 MVL06 MVL07 MVR01 MVR02 MVR03 MVR04 MVR05 MVR06 MVR07 MVR08 Other cells (10)
Full list of Other cells in this dataset
CEPshDL CEPshDR CEPshVL CEPshVR GLRDL GLRDR GLRL GLRR GLRVL GLRVR