Dataset: White et al. 1986 JSH/L4
Chemical and electrical connectivity of the JSH L4 worm from White et al. 1986 data, taken from the neurodata.txt file from R. Durbin's thesis 1987.
Choose Dataset
WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from White et al. 1986. Data extracted from neurodata_updated.txt for neuronal connectivity of JSH L4 from Durbin thesis. Python Reader: DurbinJSHDataReader
Choose View
Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
Escape Response Circuit from Pirri & Alkema, 2013
Symmetry graph of that view, Escape, is not possible, as it contains nodes with multiple cells
Symmetry graph of that view, Escape, is not possible, as it contains nodes with multiple cells
Escape Response Circuit (Escape)
Escape Response Circuit from Pirri & Alkema, 2013
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (15, 15) matrix | 22 non-zero entries 3 nodes with self-connections Avg. weight: 11.954545 Sum of weights: 263.0 |
ALM, AVB, AVM, PVC, RIM, RMD, SMD | AVA, AVB, AVD, Body Musc, PVC, RIM, RMD, SMD |
| Electrical | (15, 15) matrix | 20 non-zero entries 4 nodes with self-connections Matrix is symmetric with 12 unique pairs (total unique pair weight: 108.0) Avg. weight: 7.800000 Sum of weights: 156.0 |
ALM, AVA, AVB, AVD, AVM, RIM, RMD, SMD, VA/DA, VB/DB | ALM, AVA, AVB, AVD, AVM, RIM, RMD, SMD, VA/DA, VB/DB |
Validation tests: See here