Dataset: White et al. 1986 N2U/adult
Chemical and electrical connectivity of the N2U (adult hermaphrodite) worm from White et al. 1986 data, taken from the neurodata.txt file from R. Durbin's thesis 1987.
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from White et al. 1986. Data extracted from neurodata_updated.txt for neuronal connectivity of N2U adult from Durbin thesis. Python Reader: DurbinN2UDataReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4b of Brittin et al. 2021
Symmetry graph of that view, Brainmap, is not possible, as it contains nodes with multiple cells
Symmetry graph of that view, Brainmap, is not possible, as it contains nodes with multiple cells
BrainMap B (Brainmap)
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4b of Brittin et al. 2021
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (93, 93) matrix | 754 non-zero entries 9 nodes with self-connections Avg. weight: 4.710875 Sum of weights: 3552.0 |
ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALA, ALM, ALN, AQR, ASE, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVF, AVH, AVJ, AVK, AVM, AWA, AWB, AWC, BAG, BDU, CEPD, CEPV, DVA, DVC, FLP, IL1, IL1D, IL1V, IL2, IL2D, IL2V, OLL, OLQD, OLQV, PVC, PVP, PVQ, RIA, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, URX, URYD, URYV, VNC | ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALA, ALM, ALN, AQR, ASE, ASG, ASH, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AVM, AWA, AWB, AWC, BAG, BDU, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2V, OLL, OLQD, OLQV, PVC, PVP, PVQ, RIA, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, URX, URYD, URYV, VNC |
| Electrical | (93, 93) matrix | 286 non-zero entries 30 nodes with self-connections Matrix is symmetric with 158 unique pairs (total unique pair weight: 367.0) Avg. weight: 2.279720 Sum of weights: 652.0 |
ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALM, ALN, AQR, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVJ, AVK, AVM, AWA, AWB, BAG, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, OLL, OLQD, OLQV, PVC, PVP, PVQ, RIB, RIC, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URB, URX, URYD, URYV, VNC | ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALM, ALN, AQR, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVJ, AVK, AVM, AWA, AWB, BAG, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, OLL, OLQD, OLQV, PVC, PVP, PVQ, RIB, RIC, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URB, URX, URYD, URYV, VNC |
| Nodes in current view (93 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (297 total) |
Num in this dataset (210 total) |
Cells in node |
|---|---|---|---|
| OLL | 2 | 2 | OLLL, OLLR |
| URYD | 2 | 2 | URYDL, URYDR |
| URYV | 2 | 2 | URYVL, URYVR |
| CEPV | 2 | 2 | CEPVL, CEPVR |
| CEPD | 2 | 2 | CEPDL, CEPDR |
| IL2D | 2 | 2 | IL2DL, IL2DR |
| IL2V | 2 | 2 | IL2VL, IL2VR |
| OLQV | 2 | 2 | OLQVL, OLQVR |
| OLQD | 2 | 2 | OLQDL, OLQDR |
| IL1D | 2 | 2 | IL1DL, IL1DR |
| IL1V | 2 | 2 | IL1VL, IL1VR |
| IL1 | 2 | 2 | IL1L, IL1R |
| IL2 | 2 | 2 | IL2L, IL2R |
| ADE | 2 | 2 | ADEL, ADER |
| AQR | 1 | 1 | AQR |
| FLP | 2 | 2 | FLPL, FLPR |
| AVM | 1 | 1 | AVM |
| ALM | 2 | 2 | ALML, ALMR |
| ASH | 2 | 2 | ASHL, ASHR |
| ASK | 2 | 2 | ASKL, ASKR |
| ASJ | 2 | 2 | ASJL, ASJR |
| ASG | 2 | 2 | ASGL, ASGR |
| URX | 2 | 2 | URXL, URXR |
| AFD | 2 | 2 | AFDL, AFDR |
| AWA | 2 | 2 | AWAL, AWAR |
| ASI | 2 | 2 | ASIL, ASIR |
| BAG | 2 | 2 | BAGL, BAGR |
| ADF | 2 | 2 | ADFL, ADFR |
| AWB | 2 | 2 | AWBL, AWBR |
| ADL | 2 | 2 | ADLL, ADLR |
| ASE | 2 | 2 | ASEL, ASER |
| AWC | 2 | 2 | AWCL, AWCR |
| URAD | 2 | 2 | URADL, URADR |
| URAV | 2 | 2 | URAVL, URAVR |
| RIP | 2 | 2 | RIPL, RIPR |
| ALN | 2 | 2 | ALNL, ALNR |
| PVT | 1 | 0 | PVT |
| SDQ | 2 | 2 | SDQL, SDQR |
| BDU | 2 | 2 | BDUL, BDUR |
| AVJ | 2 | 2 | AVJL, AVJR |
| AIM | 2 | 2 | AIML, AIMR |
| AIN | 2 | 2 | AINL, AINR |
| AIY | 2 | 2 | AIYL, AIYR |
| PVQ | 2 | 2 | PVQL, PVQR |
| AIA | 2 | 2 | AIAL, AIAR |
| RMEV | 1 | 1 | RMEV |
| RIH | 1 | 1 | RIH |
| AVE | 2 | 2 | AVEL, AVER |
| RME | 2 | 2 | RMEL, RMER |
| RIA | 2 | 2 | RIAL, RIAR |
| RMDV | 2 | 2 | RMDVL, RMDVR |
| RMED | 1 | 1 | RMED |
| RMDD | 2 | 2 | RMDDL, RMDDR |
| RMF | 2 | 2 | RMFL, RMFR |
| AVK | 2 | 2 | AVKL, AVKR |
| RIG | 2 | 2 | RIGL, RIGR |
| DVC | 1 | 1 | DVC |
| RIS | 1 | 1 | RIS |
| RIM | 2 | 2 | RIML, RIMR |
| SMDD | 2 | 2 | SMDDL, SMDDR |
| SAAV | 2 | 2 | SAAVL, SAAVR |
| SAAD | 2 | 2 | SAADL, SAADR |
| RIV | 2 | 2 | RIVL, RIVR |
| SMDV | 2 | 2 | SMDVL, SMDVR |
| RMD | 2 | 2 | RMDL, RMDR |
| AVA | 2 | 2 | AVAL, AVAR |
| RMH | 2 | 2 | RMHL, RMHR |
| RMG | 2 | 2 | RMGL, RMGR |
| DVA | 1 | 1 | DVA |
| SMBD | 2 | 2 | SMBDL, SMBDR |
| SIBV | 2 | 2 | SIBVL, SIBVR |
| SMBV | 2 | 2 | SMBVL, SMBVR |
| SIAV | 2 | 2 | SIAVL, SIAVR |
| SIAD | 2 | 2 | SIADL, SIADR |
| RIC | 2 | 2 | RICL, RICR |
| URB | 2 | 2 | URBL, URBR |
| ADA | 2 | 2 | ADAL, ADAR |
| AVB | 2 | 2 | AVBL, AVBR |
| PVP | 2 | 2 | PVPL, PVPR |
| PVC | 2 | 2 | PVCL, PVCR |
| AVH | 2 | 2 | AVHL, AVHR |
| RIF | 2 | 2 | RIFL, RIFR |
| AVD | 2 | 2 | AVDL, AVDR |
| RIR | 1 | 1 | RIR |
| AVF | 2 | 2 | AVFL, AVFR |
| AUA | 2 | 2 | AUAL, AUAR |
| RIB | 2 | 2 | RIBL, RIBR |
| AIZ | 2 | 2 | AIZL, AIZR |
| AIB | 2 | 2 | AIBL, AIBR |
| ALA | 1 | 1 | ALA |
| Pharynx | 20 | 0 | I1L, I1R, I2L, I2R, I3, I4, I5, I6, M1, M2L, M2R, M3L, M3R, M4, M5, MCL, MCR, MI, NSML, NSMR |
| Head/neck | 37 | 36 | RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, RMHR, SABD, SABVL, SABVR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR, URADL, URADR, URAVL, URAVR |
| VNC | 71 | 6 | AS1, AS10, AS11, AS2, AS3, AS4, AS5, AS6, AS7, AS8, AS9, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, DD1, DD2, DD3, DD4, DD5, DD6, PDA, PDB, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |
Validation tests: See here