Dataset: SSData
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White_A White_L4 White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Data extracted from CElegansNeuronTables.xls for neuronal connectivity. Note: legacy dataset (based on White_whole) used in the past in OpenWorm. Only included here for reference! Do not use!. Python Reader: SpreadsheetDataReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4b of Brittin et al. 2021
BrainMap B (Brainmap)
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4b of Brittin et al. 2021
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (93, 93) matrix | 653 non-zero entries 14 nodes with self-connections Avg. weight: 7.294028 Sum of weights: 4763.0 |
ADA, ADL, AFD, AIA, AIB, AIN, AIY, AIZ, ALA, ALM, ALN, AQR, ASE, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AVM, AWB, AWC, BAG, BDU, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, OLL, OLQD, OLQV, PVC, PVP, PVQ, PVT, Pharynx, RIA, RIB, RIF, RIG, RIM, RIS, RIV, RMD, RMDD, RMDV, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, URX, URYD, URYV, VNC | ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALA, ALM, ALN, AQR, ASE, ASG, ASH, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AVM, AWA, AWB, AWC, BAG, BDU, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2V, OLL, OLQD, OLQV, PVC, PVP, PVQ, PVT, Pharynx, RIA, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URAD, URB, URX, URYD, URYV, VNC |
| Electrical | (93, 93) matrix | 330 non-zero entries 37 nodes with self-connections Avg. weight: 5.027273 Sum of weights: 1659.0 |
ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALM, ALN, AQR, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AVM, AWA, AWB, BAG, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, OLL, OLQD, OLQV, PVC, PVP, PVQ, PVT, Pharynx, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URB, URX, URYD, URYV, VNC | ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALM, ALN, AQR, ASG, ASH, ASI, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AVM, AWA, AWB, BAG, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, OLL, OLQD, OLQV, PVC, PVP, PVQ, PVT, Pharynx, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URB, URX, URYD, URYV, VNC |
| Extrasynaptic | (93, 93) matrix | 160 non-zero entries 2 nodes with self-connections Avg. weight: 4.406250 Sum of weights: 705.0 |
ADE, ADF, AIM, AWA, CEPD, CEPV, IL2D, IL2V, RIC, RIH, RIP, RIR, VNC | ADA, ADE, ADF, ADL, AFD, AIA, AIY, AIZ, ALA, ALM, ASE, ASG, ASH, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AWB, BAG, BDU, CEPD, CEPV, DVA, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2V, OLL, OLQD, OLQV, PVP, PVQ, RIA, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAV, SIAD, SIAV, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, URX, URYD, URYV, VNC |
| Acetylcholine | (93, 93) matrix | 123 non-zero entries 3 nodes with self-connections Avg. weight: 12.495935 Sum of weights: 1537.0 |
AIA, AIY, ALN, Head/neck, IL2, Pharynx, RMD, RMDD, RMDV, SAAD, SAAV, SDQ, SMBD, SMBV, SMDD, SMDV, URAD, URAV, URB, VNC | ADA, ADE, ADF, ADL, AIB, AIM, AIZ, ALM, ALN, ASE, ASG, ASH, ASK, AVA, AVB, AVD, AVE, AVK, AWA, AWC, CEPD, DVA, FLP, Head/neck, IL1, IL1D, IL2, OLL, OLQD, OLQV, PVC, PVT, Pharynx, RIA, RIB, RIC, RIF, RIH, RIM, RIP, RIS, RIV, RMD, RMDD, RMDV, RME, RMED, RMEV, RMF, RMG, RMH, SAAD, SAAV, SIAV, SIBV, SMBD, SMDD, SMDV, URB, URX, URYD, VNC |
| Acetylcholine_Tyramine | (93, 93) matrix | 14 non-zero entries Avg. weight: 4.142857 Sum of weights: 58.0 |
RIM | ADA, AIB, AVA, AVB, AVJ, AVK, RIB, RIS, RMD, RMF, SAAD, SAAV, SMDD, SMDV |
| FMRFamide | (93, 93) matrix | 84 non-zero entries 2 nodes with self-connections Avg. weight: 7.952381 Sum of weights: 668.0 |
ADL, ASE, AVA, AVE, AVK, RIG, RMG, VNC | ADA, ADE, ADF, AFD, AIA, AIB, AIM, AIY, AIZ, ALA, ALM, ALN, ASE, ASH, AVA, AVB, AVD, AVE, AVH, AVJ, AVK, AVM, AWA, AWB, AWC, BAG, BDU, CEPD, DVA, DVC, Head/neck, OLL, OLQV, PVC, PVQ, PVT, RIA, RIB, RIC, RIG, RIM, RIP, RIR, RMD, RMDV, RMF, RMH, SAAD, SIAV, SIBV, SMBD, SMBV, SMDD, URX, VNC |
| GABA | (93, 93) matrix | 71 non-zero entries 2 nodes with self-connections Avg. weight: 6.352113 Sum of weights: 451.0 |
BDU, DVA, DVC, RIA, RIS, RIV, RMED, RMEV, VNC | ADE, AIB, AIZ, ALM, AQR, AUA, AVA, AVB, AVE, AVH, AVJ, AVK, CEPD, CEPV, Head/neck, IL1, OLL, PVC, PVT, RIA, RIB, RIG, RIM, RIR, RIV, RMD, RMDD, RMDV, RMEV, RMF, SAAD, SAAV, SDQ, SIAD, SIAV, SMBD, SMBV, SMDD, SMDV, URAD, URYV, VNC |
| Glutamate | (93, 93) matrix | 366 non-zero entries 10 nodes with self-connections Avg. weight: 5.428962 Sum of weights: 1987.0 |
ADA, AFD, AIB, AIN, AIZ, ALA, ALM, AQR, ASG, ASH, ASI, ASJ, ASK, AUA, AVB, AVD, AVF, AVH, AVJ, AVM, AWB, AWC, BAG, FLP, IL1, IL1D, IL1V, OLL, OLQD, OLQV, PVC, PVP, PVQ, PVT, Pharynx, RIB, RIF, RMF, RMH, URX, URYD, URYV | ADA, ADE, ADF, ADL, AFD, AIA, AIB, AIM, AIN, AIY, AIZ, ALM, AQR, ASE, ASG, ASH, ASJ, ASK, AUA, AVA, AVB, AVD, AVE, AVF, AVH, AVJ, AVK, AWA, AWB, AWC, BAG, BDU, CEPD, CEPV, DVA, DVC, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2V, OLQV, PVC, PVP, PVQ, PVT, Pharynx, RIA, RIB, RIC, RIF, RIG, RIH, RIM, RIP, RIR, RIS, RIV, RMD, RMDD, RMDV, RME, RMEV, RMF, RMG, RMH, SAAD, SDQ, SIAD, SIAV, SIBV, SMBD, SMBV, SMDD, SMDV, URX, URYD, URYV, VNC |
| Serotonin_Glutamate | (93, 93) matrix | 1 non-zero entries 1 nodes with self-connections Matrix is symmetric with 1 unique pairs Avg. weight: 62.000000 Sum of weights: 62.0 |
Pharynx | Pharynx |
| Dopamine | (93, 93) matrix | 60 non-zero entries 1 nodes with self-connections Avg. weight: 3.933333 Sum of weights: 236.0 |
ADE, CEPD, CEPV | ADA, ADE, ADL, ALA, ASG, AVA, AVD, AVE, AVJ, AVK, BDU, CEPD, FLP, Head/neck, IL1, IL1D, IL1V, IL2, IL2V, OLL, OLQD, OLQV, RIA, RIB, RIC, RIF, RIG, RIH, RIP, RIS, RIV, RMD, RMDD, RMDV, RMG, RMH, SAAV, SIAD, SIAV, SMBD, URAD, URAV, URB, URYD |
| Serotonin | (93, 93) matrix | 91 non-zero entries 1 nodes with self-connections Avg. weight: 4.604396 Sum of weights: 419.0 |
ADF, AIM, AWA, IL2D, IL2V, RIH, RIP, RIR, VNC | ADA, ADF, AFD, AIA, AIY, AIZ, ALM, ASE, ASG, ASH, ASJ, ASK, AUA, AVB, AVD, AVE, AVF, AVH, AVJ, AWB, BAG, CEPD, CEPV, DVA, IL1D, IL1V, IL2, OLQD, OLQV, PVP, PVQ, RIA, RIB, RIC, RIF, RIG, RIH, RIP, RIR, RME, RMED, RMEV, RMG, SMBD, SMBV, URAD, URAV, URX, URYV, VNC |
| Octopamine | (93, 93) matrix | 9 non-zero entries Avg. weight: 5.555556 Sum of weights: 50.0 |
RIC | ADA, AVA, AVK, RIM, RIV, RMF, SMBD, SMDD, SMDV |
| Nodes in current view (93 total) xxxxxxxxxxxxxxxxxxxxxxxxx |
Num cells in node (297 total) |
Num in this dataset (297 total) |
Cells in node |
|---|---|---|---|
| OLL | 2 | 2 | OLLL, OLLR |
| URYD | 2 | 2 | URYDL, URYDR |
| URYV | 2 | 2 | URYVL, URYVR |
| CEPV | 2 | 2 | CEPVL, CEPVR |
| CEPD | 2 | 2 | CEPDL, CEPDR |
| IL2D | 2 | 2 | IL2DL, IL2DR |
| IL2V | 2 | 2 | IL2VL, IL2VR |
| OLQV | 2 | 2 | OLQVL, OLQVR |
| OLQD | 2 | 2 | OLQDL, OLQDR |
| IL1D | 2 | 2 | IL1DL, IL1DR |
| IL1V | 2 | 2 | IL1VL, IL1VR |
| IL1 | 2 | 2 | IL1L, IL1R |
| IL2 | 2 | 2 | IL2L, IL2R |
| ADE | 2 | 2 | ADEL, ADER |
| AQR | 1 | 1 | AQR |
| FLP | 2 | 2 | FLPL, FLPR |
| AVM | 1 | 1 | AVM |
| ALM | 2 | 2 | ALML, ALMR |
| ASH | 2 | 2 | ASHL, ASHR |
| ASK | 2 | 2 | ASKL, ASKR |
| ASJ | 2 | 2 | ASJL, ASJR |
| ASG | 2 | 2 | ASGL, ASGR |
| URX | 2 | 2 | URXL, URXR |
| AFD | 2 | 2 | AFDL, AFDR |
| AWA | 2 | 2 | AWAL, AWAR |
| ASI | 2 | 2 | ASIL, ASIR |
| BAG | 2 | 2 | BAGL, BAGR |
| ADF | 2 | 2 | ADFL, ADFR |
| AWB | 2 | 2 | AWBL, AWBR |
| ADL | 2 | 2 | ADLL, ADLR |
| ASE | 2 | 2 | ASEL, ASER |
| AWC | 2 | 2 | AWCL, AWCR |
| URAD | 2 | 2 | URADL, URADR |
| URAV | 2 | 2 | URAVL, URAVR |
| RIP | 2 | 2 | RIPL, RIPR |
| ALN | 2 | 2 | ALNL, ALNR |
| PVT | 1 | 1 | PVT |
| SDQ | 2 | 2 | SDQL, SDQR |
| BDU | 2 | 2 | BDUL, BDUR |
| AVJ | 2 | 2 | AVJL, AVJR |
| AIM | 2 | 2 | AIML, AIMR |
| AIN | 2 | 2 | AINL, AINR |
| AIY | 2 | 2 | AIYL, AIYR |
| PVQ | 2 | 2 | PVQL, PVQR |
| AIA | 2 | 2 | AIAL, AIAR |
| RMEV | 1 | 1 | RMEV |
| RIH | 1 | 1 | RIH |
| AVE | 2 | 2 | AVEL, AVER |
| RME | 2 | 2 | RMEL, RMER |
| RIA | 2 | 2 | RIAL, RIAR |
| RMDV | 2 | 2 | RMDVL, RMDVR |
| RMED | 1 | 1 | RMED |
| RMDD | 2 | 2 | RMDDL, RMDDR |
| RMF | 2 | 2 | RMFL, RMFR |
| AVK | 2 | 2 | AVKL, AVKR |
| RIG | 2 | 2 | RIGL, RIGR |
| DVC | 1 | 1 | DVC |
| RIS | 1 | 1 | RIS |
| RIM | 2 | 2 | RIML, RIMR |
| SMDD | 2 | 2 | SMDDL, SMDDR |
| SAAV | 2 | 2 | SAAVL, SAAVR |
| SAAD | 2 | 2 | SAADL, SAADR |
| RIV | 2 | 2 | RIVL, RIVR |
| SMDV | 2 | 2 | SMDVL, SMDVR |
| RMD | 2 | 2 | RMDL, RMDR |
| AVA | 2 | 2 | AVAL, AVAR |
| RMH | 2 | 2 | RMHL, RMHR |
| RMG | 2 | 2 | RMGL, RMGR |
| DVA | 1 | 1 | DVA |
| SMBD | 2 | 2 | SMBDL, SMBDR |
| SIBV | 2 | 2 | SIBVL, SIBVR |
| SMBV | 2 | 2 | SMBVL, SMBVR |
| SIAV | 2 | 2 | SIAVL, SIAVR |
| SIAD | 2 | 2 | SIADL, SIADR |
| RIC | 2 | 2 | RICL, RICR |
| URB | 2 | 2 | URBL, URBR |
| ADA | 2 | 2 | ADAL, ADAR |
| AVB | 2 | 2 | AVBL, AVBR |
| PVP | 2 | 2 | PVPL, PVPR |
| PVC | 2 | 2 | PVCL, PVCR |
| AVH | 2 | 2 | AVHL, AVHR |
| RIF | 2 | 2 | RIFL, RIFR |
| AVD | 2 | 2 | AVDL, AVDR |
| RIR | 1 | 1 | RIR |
| AVF | 2 | 2 | AVFL, AVFR |
| AUA | 2 | 2 | AUAL, AUAR |
| RIB | 2 | 2 | RIBL, RIBR |
| AIZ | 2 | 2 | AIZL, AIZR |
| AIB | 2 | 2 | AIBL, AIBR |
| ALA | 1 | 1 | ALA |
| Pharynx | 20 | 20 | I1L, I1R, I2L, I2R, I3, I4, I5, I6, M1, M2L, M2R, M3L, M3R, M4, M5, MCL, MCR, MI, NSML, NSMR |
| Head/neck | 37 | 37 | RIVL, RIVR, RMDDL, RMDDR, RMDL, RMDR, RMDVL, RMDVR, RMED, RMEL, RMER, RMEV, RMHL, RMHR, SABD, SABVL, SABVR, SIADL, SIADR, SIAVL, SIAVR, SIBDL, SIBDR, SIBVL, SIBVR, SMBDL, SMBDR, SMBVL, SMBVR, SMDDL, SMDDR, SMDVL, SMDVR, URADL, URADR, URAVL, URAVR |
| VNC | 71 | 71 | AS1, AS10, AS11, AS2, AS3, AS4, AS5, AS6, AS7, AS8, AS9, DA1, DA2, DA3, DA4, DA5, DA6, DA7, DA8, DA9, DB1, DB2, DB3, DB4, DB5, DB6, DB7, DD1, DD2, DD3, DD4, DD5, DD6, PDA, PDB, VA1, VA10, VA11, VA12, VA2, VA3, VA4, VA5, VA6, VA7, VA8, VA9, VB1, VB10, VB11, VB2, VB3, VB4, VB5, VB6, VB7, VB8, VB9, VD1, VD10, VD11, VD12, VD13, VD2, VD3, VD4, VD5, VD6, VD7, VD8, VD9 |