Dataset: White et al. 1986 JSH/L4
Chemical and electrical connectivity of the JSH L4 worm from White et al. 1986 data, taken from the neurodata.txt file from R. Durbin's thesis 1987.
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WhiteN2U WhiteJSH White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 HaspelODonovan HaspelODonovan1Seg GleesonModel OlivaresModel
Dataset taken from White et al. 1986. Data extracted from neurodata_updated.txt for neuronal connectivity of JSH L4 from Durbin thesis. Python Reader: DurbinJSHDataReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4a of Brittin et al. 2021
BrainMap A (BrainmapA)
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4a of Brittin et al. 2021
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (15, 15) matrix | 104 non-zero entries 11 nodes with self-connections Avg. weight: 34.201923 Sum of weights: 3557.0 |
Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, VNC | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, VNC |
| Electrical | (15, 15) matrix | 78 non-zero entries 10 nodes with self-connections Matrix is symmetric with 44 unique pairs (total unique pair weight: 1013.0) Avg. weight: 19.153846 Sum of weights: 1494.0 |
Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, VNC | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, VNC |
Weight definition: Weights represent the count of individual presynaptic active zones observed between two neurons across all the serial EM micrographs.
Validation tests: See here