Dataset: SSData
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White_A White_L4 White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Yim2024NonNorm Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Data extracted from CElegansNeuronTables.xls for neuronal connectivity. Note: legacy dataset (based on White_whole) used in the past in OpenWorm. Only included here for reference! Do not use!. Python Reader: SpreadsheetDataReader
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Raw Data - Neurons - Pharynx - Social Network - Escape Response Circuit - Cook 2019 Fig 3 - BrainMap A - BrainMap B - Locomotion 1 - Locomotion 2 - Locomotion 3 - Peptidergic Hubs - Nonpharyngeal Neurons (herm) - Sensory Neurons (somatic) - Motor Neurons (somatic) - Motor Neurons and muscles - Interneurons (somatic) -
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4a of Brittin et al. 2021
BrainMap A (BrainmapA)
A view of the dataset in a three-layer, modular residual network architecture as in Figure 4a of Brittin et al. 2021
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical | (15, 15) matrix | 112 non-zero entries 12 nodes with self-connections Avg. weight: 42.526786 Sum of weights: 4763.0 |
Head/neck, L1_Anterior, L1_Avoidance, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, Pharynx, VNC | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, Pharynx, VNC |
| Electrical | (15, 15) matrix | 83 non-zero entries 12 nodes with self-connections Avg. weight: 19.987952 Sum of weights: 1659.0 |
Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, Pharynx, VNC | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, Pharynx, VNC |
| Extrasynaptic | (15, 15) matrix | 47 non-zero entries 8 nodes with self-connections Avg. weight: 15.000000 Sum of weights: 705.0 |
L1_Anterior, L1_Lateral, L1_Taxis, L2_Anterior, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, VNC | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, VNC |
| Acetylcholine | (15, 15) matrix | 41 non-zero entries 7 nodes with self-connections Avg. weight: 37.487805 Sum of weights: 1537.0 |
Head/neck, L1_Anterior, L2_Anterior, L2_LatSub, L2_Taxis, L3_Anterior, L3_LatSub, Pharynx, VNC | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, Pharynx, VNC |
| Acetylcholine_Tyramine | (15, 15) matrix | 4 non-zero entries 1 nodes with self-connections Avg. weight: 14.500000 Sum of weights: 58.0 |
L3_LatSub | L2_Avoidance, L3_Avoidance, L3_LatSub, L3_Taxis |
| FMRFamide | (15, 15) matrix | 29 non-zero entries 3 nodes with self-connections Avg. weight: 23.034483 Sum of weights: 668.0 |
L1_Taxis, L3_Anterior, L3_LatSub, VNC | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, VNC |
| GABA | (15, 15) matrix | 23 non-zero entries 4 nodes with self-connections Avg. weight: 19.608696 Sum of weights: 451.0 |
L2_Avoidance, L3_Anterior, L3_LatSub, VNC | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L2_Anterior, L2_Avoidance, L2_LatSub, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, VNC |
| Glutamate | (15, 15) matrix | 73 non-zero entries 9 nodes with self-connections Avg. weight: 27.219178 Sum of weights: 1987.0 |
L1_Anterior, L1_Avoidance, L1_Taxis, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Avoidance, L3_LatSub, L3_Taxis, Pharynx | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L2_LatSub, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, Pharynx, VNC |
| Serotonin_Glutamate | (15, 15) matrix | 1 non-zero entries 1 nodes with self-connections Matrix is symmetric with 1 unique pairs Avg. weight: 62.000000 Sum of weights: 62.0 |
Pharynx | Pharynx |
| Dopamine | (15, 15) matrix | 16 non-zero entries 2 nodes with self-connections Avg. weight: 14.750000 Sum of weights: 236.0 |
L1_Anterior, L1_Lateral | Head/neck, L1_Anterior, L1_Avoidance, L1_Lateral, L1_Taxis, L2_Anterior, L2_Avoidance, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis |
| Serotonin | (15, 15) matrix | 35 non-zero entries 6 nodes with self-connections Avg. weight: 11.971429 Sum of weights: 419.0 |
L1_Anterior, L1_Taxis, L2_Anterior, L2_Taxis, L3_Anterior, L3_Avoidance, VNC | L1_Anterior, L1_Avoidance, L1_Taxis, L2_Anterior, L2_Avoidance, L2_Taxis, L3_Anterior, L3_Avoidance, L3_LatSub, L3_Taxis, VNC |
| Octopamine | (15, 15) matrix | 2 non-zero entries 1 nodes with self-connections Avg. weight: 25.000000 Sum of weights: 50.0 |
L3_LatSub | L3_Avoidance, L3_LatSub |